|
|
2cb3542d30
|
adds installation instructions
|
2023-02-02 12:42:44 +01:00 |
|
|
|
994da5d710
|
adds installation instructions
|
2023-02-02 12:41:30 +01:00 |
|
|
|
822e584f9a
|
install script with options of install directory and command prefix
|
2023-02-02 12:21:49 +01:00 |
|
|
|
ab0c93d303
|
install script with options of install directory and command prefix
|
2023-02-02 12:18:04 +01:00 |
|
|
|
c0df4357dd
|
install script with options of install directory and command prefix
|
2023-02-02 12:16:56 +01:00 |
|
|
|
03b124f400
|
Patch a bug in MamberSub for primers longer than 32
|
2023-02-01 16:23:14 +01:00 |
|
|
|
7c44243032
|
Change the URL of the obitools repository
|
2023-02-01 08:34:25 +01:00 |
|
|
|
e3d4da2859
|
small things...
|
2023-02-01 08:14:29 +01:00 |
|
|
|
3a151fc0a0
|
updated gitignire
|
2023-01-31 23:14:33 +01:00 |
|
|
|
871f22b83d
|
Latest version of the doc in HTML
|
2023-01-31 23:04:28 +01:00 |
|
|
|
fa6853fca1
|
Comment profiling code
|
2023-01-31 22:39:34 +01:00 |
|
|
|
e5835310cc
|
Simplify code of the JSON header formater
|
2023-01-31 17:16:55 +01:00 |
|
|
|
57c7187e6d
|
Patch the JSON header formater
|
2023-01-31 17:15:10 +01:00 |
|
|
|
9f98075510
|
Patched version of install script
|
2023-01-27 14:50:45 +01:00 |
|
|
|
f74c0bd517
|
First prelease of obiannotate
|
2023-01-27 11:35:39 +01:00 |
|
|
|
39b47a32bf
|
Complement on the doc
|
2023-01-27 10:49:28 +01:00 |
|
|
|
cfddc78161
|
Patch an aligment bug on obipairing
|
2023-01-25 13:22:56 +01:00 |
|
|
|
9b7edf0908
|
Add an install script to help in installing obitools 4 on Linux or MacOS computers
|
2023-01-23 15:44:23 +01:00 |
|
|
|
2d375df94f
|
move the worker class to the obiseq package
|
2023-01-22 22:39:13 +01:00 |
|
|
|
f97f92df72
|
rename the iterator class
|
2023-01-22 22:04:17 +01:00 |
|
|
|
4592855095
|
Adds the new version of the doc as a quarto book
|
2023-01-17 19:06:14 +01:00 |
|
|
|
f873645e8e
|
Remove old bookdown version of the documentation
|
2023-01-17 19:02:27 +01:00 |
|
|
|
20b16c0ba1
|
Force sequence reading to produce lowercase sequences.
Adds two columns to the obiclean ratio csv file
|
2022-11-22 15:06:09 +01:00 |
|
|
|
f4daa7f97f
|
Modify the gitignore
|
2022-11-17 12:05:11 +01:00 |
|
|
|
95b28a6612
|
Beginning of the documentation
|
2022-11-17 11:16:12 +01:00 |
|
|
|
29563aa94e
|
Rename the Length methods Len to follow GO standart
|
2022-11-17 11:09:58 +01:00 |
|
|
|
eb32089305
|
Refactoring related to iterators
|
2022-11-16 17:13:40 +01:00 |
|
|
|
09fc426b67
|
Refactoring related to iterators
|
2022-11-16 17:13:03 +01:00 |
|
|
|
6f853da9df
|
Remove single sequence ierators. Only batch iterators persist
|
2022-11-16 10:58:59 +01:00 |
|
|
|
f674200a6e
|
FastLCS with maxError=-1 is equivalent to FullLCS.
|
2022-11-16 09:57:36 +01:00 |
|
|
|
4375dbd9bb
|
Switxh alignment to the new LCS method and make a copy of the sequences before annotating them to prevent concurrent map access bug
|
2022-11-16 09:27:04 +01:00 |
|
|
|
18447e66a7
|
Patch a critical bug into the CopySlice function.
|
2022-11-16 09:24:17 +01:00 |
|
|
|
7f863fb383
|
Prevens errors on FASTA formating an empty sequence
|
2022-11-16 09:22:55 +01:00 |
|
|
|
493c7fddef
|
Adds API documentation
|
2022-11-16 09:21:54 +01:00 |
|
|
|
abe210d811
|
Correct option alias name to remove dupplicate
|
2022-11-15 08:58:41 +01:00 |
|
|
|
340579f6d7
|
New version of LCS computation, with abug on alignment length patched patched
|
2022-11-15 08:21:46 +01:00 |
|
|
|
18be4becec
|
Add some new packages
|
2022-11-14 14:36:04 +01:00 |
|
|
|
0f99f9a6ba
|
First trial of a fastest LCS implementation
|
2022-11-14 07:42:15 +01:00 |
|
|
|
6429f24c57
|
Accellerate a bit LCS computation
|
2022-10-27 17:30:55 +02:00 |
|
|
|
f3ddac0f50
|
Small adjustment
|
2022-10-27 11:18:44 +02:00 |
|
|
|
8aa323dad5
|
Add a first version of obitag the successor of ecotag
|
2022-10-26 13:16:56 +02:00 |
|
|
|
e17d1fbca6
|
Patch the error message stored in sequences by obimultiplex
|
2022-10-17 21:32:24 +02:00 |
|
|
|
f8df48338d
|
Several bug in annotation management
|
2022-10-12 23:01:47 +02:00 |
|
|
|
aae3398701
|
Replace the CopyMap function by the MustFillMap and adds a InterfaceToIntMap function
|
2022-10-12 22:56:38 +02:00 |
|
|
|
58dbdd8698
|
requires that father.count > son.count
|
2022-10-05 09:53:56 +02:00 |
|
|
|
d9c18ab0b5
|
Add a reverse complement worker
|
2022-10-05 09:41:59 +02:00 |
|
|
|
935fc31982
|
Adds the new obicomplement command
|
2022-10-05 09:40:09 +02:00 |
|
|
|
7873b90902
|
Patch a bug in obigrep...
|
2022-10-02 20:52:26 +02:00 |
|
|
|
65210755cc
|
Patch reading of annotation from stdin
|
2022-09-29 14:48:05 +02:00 |
|
|
|
d0f63fda56
|
add functionalities to the expression
predicate evaluations
|
2022-09-28 16:13:20 +02:00 |
|
