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2d375df94f
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move the worker class to the obiseq package
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2023-01-22 22:39:13 +01:00 |
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f97f92df72
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rename the iterator class
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2023-01-22 22:04:17 +01:00 |
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4592855095
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Adds the new version of the doc as a quarto book
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2023-01-17 19:06:14 +01:00 |
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f873645e8e
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Remove old bookdown version of the documentation
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2023-01-17 19:02:27 +01:00 |
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20b16c0ba1
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Force sequence reading to produce lowercase sequences.
Adds two columns to the obiclean ratio csv file
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2022-11-22 15:06:09 +01:00 |
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f4daa7f97f
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Modify the gitignore
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2022-11-17 12:05:11 +01:00 |
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95b28a6612
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Beginning of the documentation
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2022-11-17 11:16:12 +01:00 |
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29563aa94e
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Rename the Length methods Len to follow GO standart
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2022-11-17 11:09:58 +01:00 |
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eb32089305
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Refactoring related to iterators
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2022-11-16 17:13:40 +01:00 |
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09fc426b67
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Refactoring related to iterators
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2022-11-16 17:13:03 +01:00 |
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6f853da9df
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Remove single sequence ierators. Only batch iterators persist
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2022-11-16 10:58:59 +01:00 |
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f674200a6e
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FastLCS with maxError=-1 is equivalent to FullLCS.
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2022-11-16 09:57:36 +01:00 |
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4375dbd9bb
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Switxh alignment to the new LCS method and make a copy of the sequences before annotating them to prevent concurrent map access bug
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2022-11-16 09:27:04 +01:00 |
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18447e66a7
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Patch a critical bug into the CopySlice function.
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2022-11-16 09:24:17 +01:00 |
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7f863fb383
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Prevens errors on FASTA formating an empty sequence
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2022-11-16 09:22:55 +01:00 |
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493c7fddef
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Adds API documentation
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2022-11-16 09:21:54 +01:00 |
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abe210d811
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Correct option alias name to remove dupplicate
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2022-11-15 08:58:41 +01:00 |
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340579f6d7
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New version of LCS computation, with abug on alignment length patched patched
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2022-11-15 08:21:46 +01:00 |
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18be4becec
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Add some new packages
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2022-11-14 14:36:04 +01:00 |
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0f99f9a6ba
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First trial of a fastest LCS implementation
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2022-11-14 07:42:15 +01:00 |
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6429f24c57
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Accellerate a bit LCS computation
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2022-10-27 17:30:55 +02:00 |
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f3ddac0f50
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Small adjustment
|
2022-10-27 11:18:44 +02:00 |
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8aa323dad5
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Add a first version of obitag the successor of ecotag
|
2022-10-26 13:16:56 +02:00 |
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e17d1fbca6
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Patch the error message stored in sequences by obimultiplex
|
2022-10-17 21:32:24 +02:00 |
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f8df48338d
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Several bug in annotation management
|
2022-10-12 23:01:47 +02:00 |
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aae3398701
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Replace the CopyMap function by the MustFillMap and adds a InterfaceToIntMap function
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2022-10-12 22:56:38 +02:00 |
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58dbdd8698
|
requires that father.count > son.count
|
2022-10-05 09:53:56 +02:00 |
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d9c18ab0b5
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Add a reverse complement worker
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2022-10-05 09:41:59 +02:00 |
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935fc31982
|
Adds the new obicomplement command
|
2022-10-05 09:40:09 +02:00 |
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7873b90902
|
Patch a bug in obigrep...
|
2022-10-02 20:52:26 +02:00 |
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65210755cc
|
Patch reading of annotation from stdin
|
2022-09-29 14:48:05 +02:00 |
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d0f63fda56
|
add functionalities to the expression
predicate evaluations
|
2022-09-28 16:13:20 +02:00 |
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fe5d8e3340
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Patch a bug in ngsfilter reading and sample matching
|
2022-09-28 14:29:19 +02:00 |
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ebefa28cc0
|
Patch memory error related to []byte pool
|
2022-09-28 14:28:37 +02:00 |
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57ba460929
|
add the obi_mutation attribute to the sequences
|
2022-09-20 22:03:44 +02:00 |
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da8e3fd7b7
|
Correct the orientation of the mutation pattern
|
2022-09-20 22:03:01 +02:00 |
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49b4d97803
|
Remove HTML escaping to json marshaling
|
2022-09-20 22:01:52 +02:00 |
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3cd8aabd83
|
Correct some misspelling in option helps
Changes to be committed:
modified: pkg/obitools/obiclean/options.go
modified: pkg/obitools/obiconvert/options.go
|
2022-09-20 21:59:38 +02:00 |
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f6735a634e
|
Correctly patch the memory leak related to the apatsequence
|
2022-09-12 15:19:46 +02:00 |
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448f5f83fa
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Patch a bug in comparison of attibutes during sequence annotation merging
|
2022-09-08 07:50:17 +02:00 |
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6b8f4490cf
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Change obiclean algorithm for a better evaluation of ratio
|
2022-08-31 20:38:03 +02:00 |
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90ba980de6
|
correct the gml writer
|
2022-08-30 10:28:05 +02:00 |
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cd202ba72e
|
Adds of new modules
|
2022-08-23 15:09:51 +02:00 |
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91c2ce551d
|
Add new modules
|
2022-08-23 15:09:03 +02:00 |
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d04161a0fb
|
small code refactoring
|
2022-08-23 15:08:35 +02:00 |
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d2f4919bc8
|
comment out to option that need to be rethought
|
2022-08-23 15:07:48 +02:00 |
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989e678f6b
|
refactor code and change algorithm used to read from many files
|
2022-08-23 15:07:06 +02:00 |
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|
bdf317819b
|
Code refactoring
|
2022-08-23 11:12:00 +02:00 |
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57e0966d35
|
Adds some documentation
|
2022-08-23 11:11:36 +02:00 |
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4df99cec5b
|
Chang log package
|
2022-08-23 11:10:04 +02:00 |
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