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3b5d4ba455
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patch a bug in obiannotate
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2025-03-11 16:35:38 +01:00 |
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50d11ce374
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Add a pre-push git-hook to run tests on obitools commands before pushing on master
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2025-03-08 18:56:02 +01:00 |
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52d5f6fe11
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make makefile crashing on test error
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2025-03-08 16:54:24 +01:00 |
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78caabd2fd
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Add basic test on -h for all the commands
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2025-03-08 16:28:06 +01:00 |
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65bd29b955
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normalize the usage of obitaxonomy
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2025-03-08 13:00:55 +01:00 |
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b18c9b7ac6
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add the --raw-taxid option
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2025-03-08 09:40:06 +01:00 |
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78df7db18d
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typos
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2025-03-08 07:44:41 +01:00 |
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fc08c12ab0
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update release notes
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2025-03-08 07:42:20 +01:00 |
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0339e4dffa
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Patch size limite of the filetype guesser
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2025-03-08 07:34:02 +01:00 |
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706b44c37f
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Add option for csv input format
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2025-03-08 07:21:24 +01:00 |
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fbe7d15dc3
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Changes to be committed:
modified: pkg/obioptions/version.go
modified: pkg/obitools/obicleandb/obicleandb.go
modified: pkg/obitools/obicleandb/options.go
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2025-03-06 13:38:38 +01:00 |
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b5cf586f17
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patch a duplicate --taxonomy option in obirefidxdb
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2025-03-06 11:36:20 +01:00 |
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286e27d6ba
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patch the scienctific_name tag name to "scientific_name"
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2025-03-05 14:22:12 +01:00 |
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996ec69bd9
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update the release notes for version 4.4.0
Release_4.4.0
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2025-03-01 12:56:39 +01:00 |
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5f9182d25b
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Changes to be committed:
modified: pkg/obioptions/version.go
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2025-03-01 09:20:39 +01:00 |
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9913fa8354
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Changes to be committed:
modified: pkg/obioptions/version.go
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2025-03-01 09:14:56 +01:00 |
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7b23314651
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Some typos
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2025-03-01 08:29:27 +01:00 |
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1e541eac4c
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Last commit version
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2025-03-01 08:24:26 +01:00 |
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13cd4c86ac
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Patch the bug on --out with paired sequence files
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2025-02-27 18:13:21 +01:00 |
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75dd535201
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Add a --valid-taxid option to obigrep
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2025-02-27 18:12:55 +01:00 |
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573acafafc
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Patch bug on ecotag with too short sequences
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2025-02-27 15:09:07 +01:00 |
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0067152c2b
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Patch the production of the ratio file
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2025-02-27 10:19:39 +01:00 |
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791d253edc
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Generate the ratio file as compressed if -Z option enabled.
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2025-02-27 09:06:07 +01:00 |
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6245d7f684
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Changes to be committed:
modified: .gitignore
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2025-02-24 15:47:45 +01:00 |
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13d610aff7
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Changes to be committed:
modified: pkg/obioptions/version.go
modified: pkg/obitools/obiclean/chimera.go
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2025-02-24 15:25:45 +01:00 |
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db284f1d44
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Add an experimental chimera detection...
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2025-02-24 15:02:49 +01:00 |
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51b3e83d32
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some cleaning
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2025-02-24 11:31:49 +01:00 |
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8671285d02
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add the --min-sample-count option to obiclean.
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2025-02-24 08:48:31 +01:00 |
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51d11aa36d
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Changes to be committed:
modified: pkg/obialign/alignment.go
modified: pkg/obialign/pairedendalign.go
modified: pkg/obioptions/version.go
modified: pkg/obitools/obipairing/pairing.go
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2025-02-23 17:37:56 +01:00 |
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fb6f857d8c
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Update the computation of the consensus quality score
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2025-02-23 15:16:31 +01:00 |
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d4209b4549
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Add a basic test for obiparing
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2025-02-22 09:57:44 +01:00 |
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ef05d4975f
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Upadte the scoring schema of obipairing
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2025-02-21 22:41:34 +01:00 |
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4588bf8b5d
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Patch the make file to fail on error
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2025-02-19 15:55:07 +01:00 |
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090633850d
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Changes to be committed:
modified: obitests/obitools/obicount/test.sh
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2025-02-19 15:28:42 +01:00 |
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15a058cf63
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with all the sample files for tests
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2025-02-19 15:27:38 +01:00 |
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2f5f7634d6
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Changes to be committed:
modified: obitests/obitools/obicount/test.sh
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2025-02-19 14:50:10 +01:00 |
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48138b605c
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Changes to be committed:
modified: .github/workflows/obitest.yml
modified: Makefile
modified: obitests/obitools/obicount/test.sh
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2025-02-19 14:37:05 +01:00 |
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aed22c12a6
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Changes to be committed:
modified: obitests/obitools/obicount/test.sh
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2025-02-19 14:34:22 +01:00 |
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443a9b3ce3
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Changes to be committed:
modified: Makefile
modified: obitests/obitools/obicount/test.sh
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2025-02-19 14:28:49 +01:00 |
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7e90537379
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For run of test using bash in makefile
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2025-02-19 13:58:52 +01:00 |
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d3d15acc6c
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Changes to be committed:
modified: obitests/obitools/obicount/test.sh
modified: pkg/obioptions/version.go
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2025-02-19 13:54:01 +01:00 |
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bd4a0b5ca5
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Essais d'une google action pour lancer les tests des obitools
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2025-02-19 13:45:43 +01:00 |
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952f85f312
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A first trial of a test for obicount
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2025-02-19 13:17:36 +01:00 |
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4774438644
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Changes to be committed:
modified: pkg/obiformats/universal_read.go
modified: pkg/obioptions/version.go
modified: pkg/obiseq/taxonomy_methods.go
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2025-02-12 08:40:38 +01:00 |
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6a8061cc4f
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Add managment of the taxonomy alias politic
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2025-02-10 14:05:47 +01:00 |
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e2563cd8df
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Patch a bug in registering merged taxa
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2025-02-10 11:42:46 +01:00 |
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f2e81adf95
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Changes to be committed:
modified: .gitignore
deleted: xxx.csv
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2025-02-05 19:28:19 +01:00 |
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f27e9bc91e
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patch a bug related to csv and qualities
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2025-02-05 19:27:00 +01:00 |
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773e54965d
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Patch a bug on compressed output
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2025-02-05 14:18:24 +01:00 |
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ceca33998b
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add extensions fq in directory scanning
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2025-02-04 20:34:58 +01:00 |
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