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3b5d4ba455
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patch a bug in obiannotate
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2025-03-11 16:35:38 +01:00 |
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7c4042df6b
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introduce obidefault
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2025-01-27 17:12:45 +01:00 |
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5b98393a68
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Refactor sequence file reading
Former-commit-id: 3dcb96e68da648d72bb585da047e3496427d7851
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2024-05-01 00:50:23 +02:00 |
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d30d736e48
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Simplify the workers code by removing dupplicates
Former-commit-id: 638fcf8d88dd93755d1ec89c8fe92f6ed3f733df
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2024-04-30 12:22:22 +02:00 |
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7bd073ccd4
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First version of obisplit and patch a bug in the new workers API
Former-commit-id: f28af9f104c08d68e29fd866739d8dd58241da63
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2024-03-03 11:16:24 -04:00 |
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0f3871d203
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Change the API of workers
Former-commit-id: 9b07306edd8cf28266f86f95823948fa99d39ea9
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2024-03-02 16:03:46 -04:00 |
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eb351a7530
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patch bug in worker
Former-commit-id: f83cc62fc7a85f732e871f8866f80f738f494f9e
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2023-12-03 22:44:13 +01:00 |
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8d77cc4133
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Change path of the obitools pkg
Former-commit-id: 311cbf8df3b990b393c6f4885d62e74564423b65
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2023-11-29 12:14:37 +01:00 |
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2e0c1bd801
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Correct the number of workers
Former-commit-id: febbccfb853263e0761ecfccb0f09c8c1bf88475
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2023-11-22 09:46:30 +01:00 |
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2a11adb346
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Add some doc and switch to the parallel gzip library
Former-commit-id: 2c1187001f989ba3de5895f516d4c8b54d52a4c4
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2023-08-25 14:36:38 +02:00 |
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988ae79989
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Optimize memory allocation of the apat algorithms
Former-commit-id: 5010c5a666b322715b3b81c1078d325e1f647ede
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2023-03-28 19:37:05 +07:00 |
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d88de15cdc
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Refactoring codes for removing buffer size options. An some other changes...
Former-commit-id: 10b57cc1a27446ade3c444217341e9651e89cdce
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2023-03-07 11:12:13 +07:00 |
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072b85e155
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change the model for representing paired reads and extend its usage to other commands
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2023-02-23 23:35:58 +01:00 |
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2d375df94f
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move the worker class to the obiseq package
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2023-01-22 22:39:13 +01:00 |
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f97f92df72
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rename the iterator class
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2023-01-22 22:04:17 +01:00 |
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6f853da9df
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Remove single sequence ierators. Only batch iterators persist
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2022-11-16 10:58:59 +01:00 |
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d9c18ab0b5
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Add a reverse complement worker
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2022-10-05 09:41:59 +02:00 |
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6b8f4490cf
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Change obiclean algorithm for a better evaluation of ratio
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2022-08-31 20:38:03 +02:00 |
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844e24b818
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Add information on the number of workers in the log
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2022-08-21 13:41:58 +02:00 |
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abcf02e488
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Start to use leveled log
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2022-02-24 12:14:52 +01:00 |
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eaf65fbcce
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Some code refactoring, a new version of obiuniq more efficient in memory and a first make file allowing to build obitools
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2022-02-24 07:08:40 +01:00 |
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