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6b8f4490cf
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Change obiclean algorithm for a better evaluation of ratio
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2022-08-31 20:38:03 +02:00 |
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90ba980de6
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correct the gml writer
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2022-08-30 10:28:05 +02:00 |
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cd202ba72e
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Adds of new modules
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2022-08-23 15:09:51 +02:00 |
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91c2ce551d
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Add new modules
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2022-08-23 15:09:03 +02:00 |
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d04161a0fb
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small code refactoring
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2022-08-23 15:08:35 +02:00 |
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d2f4919bc8
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comment out to option that need to be rethought
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2022-08-23 15:07:48 +02:00 |
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989e678f6b
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refactor code and change algorithm used to read from many files
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2022-08-23 15:07:06 +02:00 |
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bdf317819b
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Code refactoring
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2022-08-23 11:12:00 +02:00 |
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57e0966d35
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Adds some documentation
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2022-08-23 11:11:36 +02:00 |
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4df99cec5b
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Chang log package
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2022-08-23 11:10:04 +02:00 |
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abaede48b5
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Refactoring of some code
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2022-08-23 11:07:39 +02:00 |
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62968aaa26
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patch the Taxid method
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2022-08-23 11:06:51 +02:00 |
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1e58c92086
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Adds a function to test that a list contains at least one occurrence of an element
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2022-08-23 11:06:28 +02:00 |
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5a81525e46
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Adds a genbank parser
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2022-08-23 11:04:57 +02:00 |
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a71e65963b
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Modify the .gitignore
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2022-08-21 17:53:51 +02:00 |
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31c45bf46f
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Adds documentation and few methods to the BioSequences
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2022-08-21 17:53:19 +02:00 |
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eca1af9957
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Patch a bug on the FilterOn method
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2022-08-21 15:05:14 +02:00 |
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ad4a861261
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Change some comments
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2022-08-21 14:47:22 +02:00 |
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10663bf79c
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Patch an algorithm error on th Annotation Classifier
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2022-08-21 14:45:53 +02:00 |
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f1e3a68dc4
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improved performance
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2022-08-21 13:44:09 +02:00 |
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02f445f02f
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same as previous commit
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2022-08-21 13:43:27 +02:00 |
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34e957d3fb
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Add an option alowwing to use the pool method instead of the concat method when several input files are specified
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2022-08-21 13:43:00 +02:00 |
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844e24b818
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Add information on the number of workers in the log
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2022-08-21 13:41:58 +02:00 |
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f00456fcf3
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Add a second way to merge several batch iterators using the pool method.
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2022-08-21 13:41:15 +02:00 |
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3e40ae9d52
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Patch a memory leak in apat sequence
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2022-08-21 13:40:20 +02:00 |
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9677f531c4
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Improved performance and ability to read very long sequences.
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2022-08-21 13:38:13 +02:00 |
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5dd835d3e7
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A first functional version of obiclean
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2022-08-20 18:01:07 +02:00 |
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a07d348aea
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small change
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2022-07-31 21:52:04 +02:00 |
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821abb1395
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package obistat debut
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2022-07-28 16:52:27 +02:00 |
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b4cabf31fc
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Correctly print StatsOn values in obiformat style
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2022-06-14 10:00:45 +02:00 |
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f0de4d8f28
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Finalize the correct merging of statistic of occurrences, in I expect every situation
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2022-06-14 09:54:33 +02:00 |
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6b13729eba
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Adds a test for not pushing empty batch on the output
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2022-06-14 09:53:35 +02:00 |
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cf5b4baa54
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Small bug in sequence counting on merge
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2022-05-30 16:28:59 +02:00 |
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f14860a486
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Patch header parting and formatiing
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2022-05-27 11:53:29 +03:00 |
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656eda1f73
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A fiirst version of LCS score function
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2022-03-07 16:37:21 +01:00 |
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62cd1c44dc
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Corrects some bug in building the sequence filter
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2022-02-25 10:36:01 +01:00 |
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011898bd9d
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A first version of obigrep. Normally fully functionnal, but not fully tested
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2022-02-25 07:29:52 +01:00 |
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0a36447e2a
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Adds the log module
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2022-02-24 12:15:36 +01:00 |
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a18745a34d
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Modify the gitignore
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2022-02-24 12:15:09 +01:00 |
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abcf02e488
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Start to use leveled log
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2022-02-24 12:14:52 +01:00 |
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f18cc034bb
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add an option alias -O for the old obi format
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2022-02-24 07:26:55 +01:00 |
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f5b278f5ec
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edit .gitignore
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2022-02-24 07:09:35 +01:00 |
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eaf65fbcce
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Some code refactoring, a new version of obiuniq more efficient in memory and a first make file allowing to build obitools
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2022-02-24 07:08:40 +01:00 |
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2e7c1834b0
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Big change iin the data model, and a first version of obiuniq
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2022-02-21 19:00:23 +01:00 |
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9737f97084
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before big changes
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2022-02-18 22:53:09 +01:00 |
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37ce3536e1
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New more functionnal version of obiuniq. But it has a memory leak
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2022-02-18 10:01:23 +01:00 |
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6067b92e2f
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Adds the notioon of NA value
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2022-02-18 10:00:42 +01:00 |
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aef546dae3
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Patch a bug in the recycle method
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2022-02-18 10:00:15 +01:00 |
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94457f5116
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Creare a reorder method
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2022-02-18 09:59:47 +01:00 |
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cb125bb2a4
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Adds an error message when no sample can be associated
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2022-02-18 09:58:56 +01:00 |
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