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c94b2974fb
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Reorganization of the documentation book directory
Former-commit-id: 095acaf9c8649b0e527c6253dc79330feedac865
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2023-02-23 23:41:24 +01:00 |
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072b85e155
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change the model for representing paired reads and extend its usage to other commands
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2023-02-23 23:35:58 +01:00 |
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ebb05fcdf7
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code refactoring. Prefix function name having behaviour depending on command line option by the prefix CLI
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2023-02-23 23:32:59 +01:00 |
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a0ab14c205
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Complete the documentation and add a Release note file
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2023-02-18 19:54:21 +01:00 |
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56722895e4
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Adds to every obitools the ability to save in gzip compressed files
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2023-02-18 12:06:52 +01:00 |
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1a08ad4254
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Flush the buffered io
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2023-02-18 07:23:14 +01:00 |
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3e1f88b37b
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adds the subspc function to the gval language
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2023-02-17 23:10:43 +01:00 |
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d04eb915b3
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adds a directory option to obidistribute
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2023-02-17 22:52:53 +01:00 |
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9554a32490
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Add capacity to obidistribute to save gzipped files
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2023-02-17 12:52:19 +01:00 |
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6fd426d8be
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Update obiapat.c
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2023-02-17 11:29:27 +01:00 |
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9cf9d4d504
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Update obiapat.c by removing dependancy to asprintf by using snprintf
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2023-02-17 11:28:14 +01:00 |
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8458c0cd8b
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Patch a bug in the genbank reader for the sequence longer than 10kb.
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2023-02-17 10:54:03 +01:00 |
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ed87f821eb
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adds the _taxid suffix to the rank taxid attributes.
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2023-02-16 16:13:55 +01:00 |
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2975042982
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Adds the possiblility to append to files to obidistribute
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2023-02-16 16:13:13 +01:00 |
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85349668d0
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Add some options to obiannotate
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2023-02-16 13:32:27 +01:00 |
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6e36b22040
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Normalise the managment of speed measure
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2023-02-16 13:31:49 +01:00 |
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f56363a100
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Patch an embl/genbank parser error
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2023-02-16 13:30:42 +01:00 |
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08521c74e2
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Adds Aho-Corasick matching to obiannotate
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2023-02-09 15:59:11 +01:00 |
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8b70b1a5d8
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Last bug on sequence writing
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2023-02-08 13:56:50 +01:00 |
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526bf79c7f
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Patch for some lost of data during sequence writing
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2023-02-08 13:14:26 +01:00 |
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4117cbdd08
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Stabilize the obipairing output. whant run twice on the same dataset results are identical
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2023-02-05 11:06:31 +01:00 |
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a6af0abdd8
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Documentation writting
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2023-02-03 23:00:23 +01:00 |
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14a4522a07
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site wed
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2023-02-02 23:47:22 +01:00 |
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99be9dd5fd
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Update .gitlab-ci.yml
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2023-02-02 23:36:13 +01:00 |
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61ba3bd648
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Add new directory
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2023-02-02 23:30:04 +01:00 |
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36e6a3edef
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Add new file
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2023-02-02 23:29:04 +01:00 |
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7756aebab1
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more doc
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2023-02-02 23:11:08 +01:00 |
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2002299b7f
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reorder some edits
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2023-02-02 23:09:16 +01:00 |
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060f7db082
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Adds code for the --length option of obiannotate
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2023-02-02 17:15:06 +01:00 |
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5639a09fb9
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Add the --with-taxon-at-rank option code to obiannotate
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2023-02-02 16:36:32 +01:00 |
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886c5118e3
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install script with options of install directory and command prefix
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2023-02-02 13:37:27 +01:00 |
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a1fbaed6e9
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install script with options of install directory and command prefix
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2023-02-02 13:36:55 +01:00 |
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f0a2744435
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install script with options of install directory and command prefix
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2023-02-02 13:23:16 +01:00 |
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49e4cefd5b
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install script with options of install directory and command prefix
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2023-02-02 13:15:59 +01:00 |
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5dbf8d6203
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remove the g prefix by default
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2023-02-02 13:11:04 +01:00 |
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2cb3542d30
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adds installation instructions
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2023-02-02 12:42:44 +01:00 |
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994da5d710
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adds installation instructions
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2023-02-02 12:41:30 +01:00 |
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822e584f9a
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install script with options of install directory and command prefix
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2023-02-02 12:21:49 +01:00 |
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ab0c93d303
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install script with options of install directory and command prefix
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2023-02-02 12:18:04 +01:00 |
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c0df4357dd
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install script with options of install directory and command prefix
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2023-02-02 12:16:56 +01:00 |
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03b124f400
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Patch a bug in MamberSub for primers longer than 32
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2023-02-01 16:23:14 +01:00 |
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7c44243032
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Change the URL of the obitools repository
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2023-02-01 08:34:25 +01:00 |
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e3d4da2859
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small things...
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2023-02-01 08:14:29 +01:00 |
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3a151fc0a0
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updated gitignire
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2023-01-31 23:14:33 +01:00 |
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871f22b83d
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Latest version of the doc in HTML
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2023-01-31 23:04:28 +01:00 |
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fa6853fca1
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Comment profiling code
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2023-01-31 22:39:34 +01:00 |
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e5835310cc
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Simplify code of the JSON header formater
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2023-01-31 17:16:55 +01:00 |
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57c7187e6d
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Patch the JSON header formater
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2023-01-31 17:15:10 +01:00 |
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9f98075510
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Patched version of install script
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2023-01-27 14:50:45 +01:00 |
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f74c0bd517
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First prelease of obiannotate
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2023-01-27 11:35:39 +01:00 |
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