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d88de15cdc
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Refactoring codes for removing buffer size options. An some other changes...
Former-commit-id: 10b57cc1a27446ade3c444217341e9651e89cdce
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2023-03-07 11:12:13 +07:00 |
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9811e440b8
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Takes into account the option parsing errors
Former-commit-id: d0b3ed0b96a72f79f887df8fbc325427e63d7a73
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2023-03-07 11:06:08 +07:00 |
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6b52dc0700
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Correct the Makefile for a default rule
Former-commit-id: 7ac32f3f9778842fecd65cdd796b81f61b7fa41f
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2023-03-02 20:48:55 +07:00 |
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b9bf88d4df
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Adds some new columns to the ratio file.
Former-commit-id: 1b2d6116622b754670e86b683077aceac2db4ce7
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2023-02-25 15:56:23 +01:00 |
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6f28d2ab68
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Patch a bug introduced by the new model for paired sequences
Former-commit-id: 7947e28ac8252b7ed46bdb9175077d412bad0aca
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2023-02-24 10:23:26 +01:00 |
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6ce3053409
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Merge branch 'master' of git.metabarcoding.org:obitools/obitools4/obitools4
Former-commit-id: 042e2300185f1b399cc19ea4d710a7cb15cb015f
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2023-02-23 23:50:57 +01:00 |
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6c5fc8f65b
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Save change in various files
Former-commit-id: 428f8ee77c584b79cc2ef45eef2902c3e0754c77
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2023-02-23 23:45:41 +01:00 |
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05323f960c
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Start writing of the man pages
Former-commit-id: 533a8a6380a5a0b66314081a5ec2aeb973ebadec
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2023-02-23 23:43:54 +01:00 |
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c94b2974fb
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Reorganization of the documentation book directory
Former-commit-id: 095acaf9c8649b0e527c6253dc79330feedac865
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2023-02-23 23:41:24 +01:00 |
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072b85e155
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change the model for representing paired reads and extend its usage to other commands
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2023-02-23 23:35:58 +01:00 |
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ebb05fcdf7
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code refactoring. Prefix function name having behaviour depending on command line option by the prefix CLI
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2023-02-23 23:32:59 +01:00 |
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0b8f35cbf6
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Update Release-notes.md
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2023-02-18 19:57:21 +01:00 |
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a0ab14c205
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Complete the documentation and add a Release note file
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2023-02-18 19:54:21 +01:00 |
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56722895e4
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Adds to every obitools the ability to save in gzip compressed files
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2023-02-18 12:06:52 +01:00 |
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1a08ad4254
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Flush the buffered io
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2023-02-18 07:23:14 +01:00 |
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3e1f88b37b
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adds the subspc function to the gval language
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2023-02-17 23:10:43 +01:00 |
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d04eb915b3
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adds a directory option to obidistribute
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2023-02-17 22:52:53 +01:00 |
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9554a32490
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Add capacity to obidistribute to save gzipped files
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2023-02-17 12:52:19 +01:00 |
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6fd426d8be
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Update obiapat.c
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2023-02-17 11:29:27 +01:00 |
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9cf9d4d504
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Update obiapat.c by removing dependancy to asprintf by using snprintf
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2023-02-17 11:28:14 +01:00 |
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8458c0cd8b
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Patch a bug in the genbank reader for the sequence longer than 10kb.
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2023-02-17 10:54:03 +01:00 |
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ed87f821eb
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adds the _taxid suffix to the rank taxid attributes.
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2023-02-16 16:13:55 +01:00 |
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2975042982
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Adds the possiblility to append to files to obidistribute
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2023-02-16 16:13:13 +01:00 |
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85349668d0
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Add some options to obiannotate
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2023-02-16 13:32:27 +01:00 |
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6e36b22040
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Normalise the managment of speed measure
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2023-02-16 13:31:49 +01:00 |
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f56363a100
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Patch an embl/genbank parser error
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2023-02-16 13:30:42 +01:00 |
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08521c74e2
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Adds Aho-Corasick matching to obiannotate
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2023-02-09 15:59:11 +01:00 |
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8b70b1a5d8
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Last bug on sequence writing
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2023-02-08 13:56:50 +01:00 |
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526bf79c7f
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Patch for some lost of data during sequence writing
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2023-02-08 13:14:26 +01:00 |
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4117cbdd08
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Stabilize the obipairing output. whant run twice on the same dataset results are identical
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2023-02-05 11:06:31 +01:00 |
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a6af0abdd8
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Documentation writting
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2023-02-03 23:00:23 +01:00 |
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14a4522a07
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site wed
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2023-02-02 23:47:22 +01:00 |
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99be9dd5fd
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Update .gitlab-ci.yml
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2023-02-02 23:36:13 +01:00 |
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61ba3bd648
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Add new directory
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2023-02-02 23:30:04 +01:00 |
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36e6a3edef
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Add new file
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2023-02-02 23:29:04 +01:00 |
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7756aebab1
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more doc
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2023-02-02 23:11:08 +01:00 |
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2002299b7f
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reorder some edits
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2023-02-02 23:09:16 +01:00 |
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060f7db082
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Adds code for the --length option of obiannotate
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2023-02-02 17:15:06 +01:00 |
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5639a09fb9
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Add the --with-taxon-at-rank option code to obiannotate
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2023-02-02 16:36:32 +01:00 |
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886c5118e3
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install script with options of install directory and command prefix
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2023-02-02 13:37:27 +01:00 |
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a1fbaed6e9
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install script with options of install directory and command prefix
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2023-02-02 13:36:55 +01:00 |
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f0a2744435
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install script with options of install directory and command prefix
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2023-02-02 13:23:16 +01:00 |
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49e4cefd5b
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install script with options of install directory and command prefix
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2023-02-02 13:15:59 +01:00 |
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5dbf8d6203
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remove the g prefix by default
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2023-02-02 13:11:04 +01:00 |
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2cb3542d30
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adds installation instructions
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2023-02-02 12:42:44 +01:00 |
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994da5d710
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adds installation instructions
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2023-02-02 12:41:30 +01:00 |
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822e584f9a
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install script with options of install directory and command prefix
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2023-02-02 12:21:49 +01:00 |
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ab0c93d303
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install script with options of install directory and command prefix
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2023-02-02 12:18:04 +01:00 |
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c0df4357dd
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install script with options of install directory and command prefix
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2023-02-02 12:16:56 +01:00 |
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03b124f400
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Patch a bug in MamberSub for primers longer than 32
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2023-02-01 16:23:14 +01:00 |
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