Commit Graph

22 Commits

Author SHA1 Message Date
d88de15cdc Refactoring codes for removing buffer size options. An some other changes...
Former-commit-id: 10b57cc1a27446ade3c444217341e9651e89cdce
2023-03-07 11:12:13 +07:00
072b85e155 change the model for representing paired reads and extend its usage to other commands 2023-02-23 23:35:58 +01:00
56722895e4 Adds to every obitools the ability to save in gzip compressed files 2023-02-18 12:06:52 +01:00
d04eb915b3 adds a directory option to obidistribute 2023-02-17 22:52:53 +01:00
9554a32490 Add capacity to obidistribute to save gzipped files 2023-02-17 12:52:19 +01:00
2975042982 Adds the possiblility to append to files to obidistribute 2023-02-16 16:13:13 +01:00
8b70b1a5d8 Last bug on sequence writing 2023-02-08 13:56:50 +01:00
526bf79c7f Patch for some lost of data during sequence writing 2023-02-08 13:14:26 +01:00
f97f92df72 rename the iterator class 2023-01-22 22:04:17 +01:00
29563aa94e Rename the Length methods Len to follow GO standart 2022-11-17 11:09:58 +01:00
09fc426b67 Refactoring related to iterators 2022-11-16 17:13:03 +01:00
6f853da9df Remove single sequence ierators. Only batch iterators persist 2022-11-16 10:58:59 +01:00
abcf02e488 Start to use leveled log 2022-02-24 12:14:52 +01:00
eaf65fbcce Some code refactoring, a new version of obiuniq more efficient in memory and a first make file allowing to build obitools 2022-02-24 07:08:40 +01:00
2e7c1834b0 Big change iin the data model, and a first version of obiuniq 2022-02-21 19:00:23 +01:00
3586ecc483 second version of obidistribute and a first buggy version of obiuniq 2022-02-15 00:47:02 +01:00
eb32620bb3 Adds a first version of a new obidistribute command 2022-02-14 00:01:01 +01:00
4551df08b1 Adds a reader for NGS filter files and change some API for the apat library 2022-01-18 13:09:32 +01:00
e8fff6477b Work on iterators and recycling of biosequences 2022-01-14 23:11:36 +01:00
ef66ca4972 Code refactoring 2022-01-14 17:32:12 +01:00
b9b9c0f179 Patch module name from oa2 to obitools 2022-01-13 23:43:01 +01:00
f53bf1b804 First commit 2022-01-13 23:27:39 +01:00