OBIKmers/obikmer
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Code Issues Pull Requests Actions Packages Projects Releases 27 Wiki Activity
Pulse Contributors Code Frequency Recent Commits

2026-05-20 - 2026-08-20
Period: 3 months
1 day 3 days 1 week 1 month 3 months 6 months 1 year

Overview

68 Active Pull Requests
0 Active Issues
68
Merged Pull Requests 0
Proposed Pull Requests 0
Closed Issues 0
New Issues
Excluding merges, 1 author has pushed 4 commits to main and 234 commits to all branches. On main, 30 files have changed and there have been 1400 additions and 1879 deletions.

36 Releases published by 1 user

Published v1.2.2 v1.2.2 2026-08-17 11:33:43 +00:00

Published v1.2.1 v1.2.1 2026-08-17 10:34:46 +00:00

Published v1.2.0 v1.2.0 2026-08-17 09:40:57 +00:00

Published v1.1.44 v1.1.44 2026-08-11 21:04:49 +00:00

Published v1.1.43 v1.1.43 2026-08-11 16:27:19 +00:00

Published v1.1.42 v1.1.42 2026-08-11 15:12:57 +00:00

Published v1.1.41 v1.1.41 2026-08-11 10:23:36 +00:00

Published v1.1.40 v1.1.40 2026-08-10 23:01:39 +00:00

Published v1.1.39 v1.1.39 2026-07-08 17:37:26 +00:00

Published v1.1.38 v1.1.38 2026-07-08 10:15:27 +00:00

Published v1.1.37 v1.1.37 2026-07-07 17:12:42 +00:00

Published v1.1.36 v1.1.36 2026-07-07 08:50:40 +00:00

Published v1.1.35 v1.1.35 2026-07-03 15:21:29 +00:00

Published v1.1.34 v1.1.34 2026-07-03 11:05:06 +00:00

Published v1.1.33 v1.1.33 2026-07-02 08:07:43 +00:00

Published v1.1.32 v1.1.32 2026-07-01 18:33:26 +00:00

Published v1.1.30 v1.1.30 2026-07-01 12:31:47 +00:00

Published v1.1.29 v1.1.29 2026-07-01 09:41:43 +00:00

Published v1.1.27 v1.1.27 2026-06-26 13:13:48 +00:00

Published v1.1.26 v1.1.26 2026-06-24 13:55:24 +00:00

Published v1.1.25 v1.1.25 2026-06-23 13:01:53 +00:00

Published v1.1.24 v1.1.24 2026-06-23 09:48:35 +00:00

Published v1.1.21 v1.1.21 2026-06-23 08:31:14 +00:00

Published v1.1.20 v1.1.20 2026-06-23 08:03:42 +00:00

Published v1.1.19 2026-06-23 07:43:17 +00:00

Published v1.1.18 2026-06-23 07:07:47 +00:00

Published v1.1.17 2026-06-23 07:00:34 +00:00

Published v1.1.16 v1.1.16 2026-06-23 06:53:37 +00:00

Published v1.1.15 v1.1.15 2026-06-22 16:29:39 +00:00

Published v1.1.14 v1.1.14 2026-06-22 14:31:04 +00:00

Published v1.1.13 2026-06-22 14:17:52 +00:00

Published v1.1.12 2026-06-22 13:52:51 +00:00

Published v1.1.11 2026-06-22 13:32:50 +00:00

Published v1.1.9 2026-06-22 13:20:12 +00:00

Published v1.1.7 2026-06-22 13:01:06 +00:00

Published v1.1.6 2026-06-22 09:38:36 +00:00

68 Pull requests merged by 1 user

Merged #69 chore: bump obikmer to 1.2.1 and disable obikindex default features 2026-08-17 11:33:56 +00:00

Merged #68 Push luqxvxskktxv 2026-08-17 10:35:13 +00:00

Merged #67 Push zpwxxpnpktps 2026-08-17 09:41:42 +00:00

Merged #66 fix: resolve test race conditions, add logging, and fix CI deadlock 2026-08-11 21:05:09 +00:00

Merged #65 ci: disable numa feature, bump obikmer, and document Sankoff costs 2026-08-11 16:28:07 +00:00

Merged #64 chore: update ci cache, document distance metrics, and bump version 2026-08-11 15:17:43 +00:00

Merged #63 refactor: centralize CPU core detection using cgroup-aware utility 2026-08-11 10:35:06 +00:00

Merged #62 Push lsqnpxrxuvpp 2026-08-11 09:09:24 +00:00

Merged #61 Push qowsvpqmoukq 2026-07-08 18:05:43 +00:00

Merged #60 Bump obikmer version to 1.1.38 and add memory footprint logging 2026-07-08 10:15:52 +00:00

Merged #59 Push smluomvxpptv 2026-07-07 17:13:04 +00:00

Merged #58 feat: filter zero-valued entries from kmer strict matches output 2026-07-07 09:22:03 +00:00

Merged #57 fix: validate packed matrix columns before repacking 2026-07-03 15:26:57 +00:00

Merged #56 Push msotyzponsls 2026-07-03 11:28:50 +00:00

Merged #55 feat(numa): introduce I/O sampling to prevent activation stalls 2026-07-02 09:36:19 +00:00

Merged #54 fix(obisys): remove activation guard to always update metrics 2026-07-01 18:34:11 +00:00

Merged #53 ci: fix registry auth and bump obikmer to 1.1.30 2026-07-01 14:20:10 +00:00

Merged #52 feat: simplify worker spawning logic and update macOS build workflow 2026-07-01 09:50:52 +00:00

Merged #51 ci: update registry auth and improve adaptive worker scaling 2026-06-26 13:16:23 +00:00

Merged #50 ci: update release workflow and bump obikmer to 1.1.26 2026-06-24 13:55:41 +00:00

Merged #49 ci: update macOS ARM64 build workflow and bump obikmer version 2026-06-23 13:15:20 +00:00

Merged #48 Push kxsopnzprltv 2026-06-23 09:51:34 +00:00

Merged #47 chore: bump version to 1.1.21 and update obikindex features 2026-06-23 08:31:32 +00:00

Merged #46 Bump obikmer to 1.1.20 and update release workflow 2026-06-23 08:03:58 +00:00

Merged #45 fix(ci): restrict workflow to PRs and improve release tagging 2026-06-23 07:52:36 +00:00

Merged #44 feat: add numa feature flag and automate release workflow 2026-06-23 07:22:34 +00:00

Merged #43 Push zkptpswyxnvt 2026-06-22 16:30:00 +00:00

Merged #42 fix(ci): enable cross-compilation in release workflow and bump obikmer 2026-06-22 14:31:27 +00:00

Merged #41 chore: bump obikmer to 1.1.13 and fix Makefile revision tag 2026-06-22 14:18:25 +00:00

Merged #40 chore: bump version to 1.1.12 and fix release workflow 2026-06-22 14:13:14 +00:00

Merged #39 ci: bypass PEP 668 restrictions and update obikmer to 1.1.11 2026-06-22 13:52:51 +00:00

Merged #38 chore: bump obikmer to 1.1.9 and update release workflow 2026-06-22 13:32:51 +00:00

Merged #37 ci: switch to Zig build toolchain and bump obikmer to 1.1.7 2026-06-22 13:20:13 +00:00

Merged #36 chore: bump obikmer to 1.1.6 and automate git tagging 2026-06-22 13:01:07 +00:00

Merged #35 ci: streamline release workflow and bump obikmer to 0.1.4 2026-06-22 09:38:36 +00:00

Merged #34 Push mtzqmmrlmzzx 2026-06-22 08:47:24 +00:00

Merged #32 Push pslsukyowzrp 2026-06-15 16:29:25 +00:00

Merged #31 Push rtnzuqxzmkon 2026-06-15 09:40:36 +00:00

Merged #30 feat: add pipeline concurrency throttling and HPC build docs 2026-06-15 08:33:41 +00:00

Merged #29 feat: implement NUMA-aware worker pools for merge command 2026-06-14 21:57:22 +00:00

Merged #28 refactor(merge): extract adaptive worker spawn logic 2026-06-13 12:56:34 +00:00

Merged #27 Push zkspuxlpumpw 2026-06-13 11:25:12 +00:00

Merged #26 Push ooxwzorvsqvy 2026-06-13 09:59:07 +00:00

Merged #25 refactor: defer SrcLayerData lookups in RawBatch 2026-06-12 20:19:22 +00:00

Merged #24 Push rwqsmuvystym 2026-06-12 19:33:21 +00:00

Merged #23 feat: enhance memory budgeting and add rebuild diagnostics 2026-06-12 13:21:12 +00:00

Merged #22 Push ylnwstyzqwrt 2026-06-12 10:10:04 +00:00

Merged #21 Push tmpsxsztwpxl 2026-06-09 13:31:25 +00:00

Merged #20 refactor: optimize dump partition iteration and add progress tracking 2026-06-09 09:34:13 +00:00

Merged #19 Push lrwmyplxxzkn 2026-06-09 08:28:21 +00:00

Merged #18 Push quqlpklvxsqx 2026-06-08 18:15:02 +00:00

Merged #17 Push pvqkqxlkkwry 2026-06-06 04:44:11 +00:00

Merged #16 Push ruqusmkoyvwm 2026-06-05 08:41:08 +00:00

Merged #15 Push rrwpnquuzsvr 2026-06-03 17:04:26 +00:00

Merged #14 Push ywwwypqxrtmy 2026-06-03 13:18:41 +00:00

Merged #13 Push pnxswqpxlyso 2026-06-01 12:45:46 +00:00

Merged #12 Push rxrxptuxltlp 2026-05-30 14:03:13 +00:00

Merged #11 Push nvyqwlpspwvl 2026-05-29 07:21:58 +00:00

Merged #10 Push tklvqnrqtzpo 2026-05-26 15:41:06 +00:00

Merged #9 Push vqmnuyrkpxot 2026-05-26 09:05:51 +00:00

Merged #8 Push kztouvrzoqym 2026-05-23 12:04:51 +00:00

Merged #7 feat: Implement RAII-based file handle throttling 2026-05-22 12:03:40 +00:00

Merged #6 feat: limit concurrent open files during scatter 2026-05-22 09:33:40 +00:00

Merged #5 refactor(scatter): move logging call into pipeline closure 2026-05-22 09:15:05 +00:00

Merged #4 feat: add input file logging and optimize path traversal 2026-05-22 09:04:43 +00:00

Merged #3 feat(obiread): add static bzip2 and lzma compression support 2026-05-22 08:29:43 +00:00

Merged #2 feat: introduce genome metadata tracking and CSV export 2026-05-22 07:36:11 +00:00

Merged #1 Push qkpyqurltlpk 2026-05-21 16:57:19 +00:00