obikmer/sankoff_params.yaml

ratio_ceiling: 0.5
cardinality_transitions:
- from: 0
  to: 0
  count: 54999793
  probability: 0.7934021725308564
- from: 0
  to: 1
  count: 8873859
  probability: 0.12801028195383377
- from: 0
  to: 2
  count: 5305545
  probability: 0.07653539585976665
- from: 0
  to: 3
  count: 126109
  probability: 0.001819191475424167
- from: 0
  to: 4
  count: 16149
  probability: 0.00023295818011898336
- from: 1
  to: 0
  count: 8873859
  probability: 0.8510749571674425
- from: 1
  to: 1
  count: 1041044
  probability: 0.09984455215137214
- from: 1
  to: 2
  count: 507272
  probability: 0.048651493749477304
- from: 1
  to: 3
  count: 4248
  probability: 0.00040741760918753563
- from: 1
  to: 4
  count: 225
  probability: 0.00002157932252052625
- from: 2
  to: 0
  count: 5305545
  probability: 0.9117891245815953
- from: 2
  to: 1
  count: 507272
  probability: 0.08717767784549091
- from: 2
  to: 2
  count: 5227
  probability: 0.0008982907041949506
- from: 2
  to: 3
  count: 689
  probability: 0.00011840870388182915
- from: 2
  to: 4
  count: 96
  probability: 0.000016498164836945715
- from: 3
  to: 0
  count: 126109
  probability: 0.9614164824273843
- from: 3
  to: 1
  count: 4248
  probability: 0.03238545399100404
- from: 3
  to: 2
  count: 689
  probability: 0.005252725470763132
- from: 3
  to: 3
  count: 98
  probability: 0.0007471220553480217
- from: 3
  to: 4
  count: 26
  probability: 0.00019821605550049553
- from: 4
  to: 0
  count: 16149
  probability: 0.9781344639612356
- from: 4
  to: 1
  count: 225
  probability: 0.013628104179285281
- from: 4
  to: 2
  count: 96
  probability: 0.00581465778316172
- from: 4
  to: 3
  count: 26
  probability: 0.0015748031496062992
- from: 4
  to: 4
  count: 14
  probability: 0.0008479709267110841
composition_transitions:
- from: 'A'
  to: 'A'
  count: 161774
  probability: 0.4701762136303263
- from: 'A'
  to: 'C'
  count: 27788
  probability: 0.0807624007835592
- from: 'A'
  to: 'G'
  count: 130019
  probability: 0.3778842157577942
- from: 'A'
  to: 'T'
  count: 24490
  probability: 0.07117716982832031
- from: 'C'
  to: 'A'
  count: 27788
  probability: 0.0780165140757087
- from: 'C'
  to: 'C'
  count: 184047
  probability: 0.5167232390273484
- from: 'C'
  to: 'G'
  count: 19622
  probability: 0.05508996830263265
- from: 'C'
  to: 'T'
  count: 124724
  probability: 0.3501702785943102
- from: 'G'
  to: 'A'
  count: 130019
  probability: 0.3610094570655886
- from: 'G'
  to: 'C'
  count: 19622
  probability: 0.05448224926003876
- from: 'G'
  to: 'G'
  count: 183951
  probability: 0.5107565097152884
- from: 'G'
  to: 'T'
  count: 26562
  probability: 0.07375178395908417
- from: 'T'
  to: 'A'
  count: 24490
  probability: 0.07335783586895636
- from: 'T'
  to: 'C'
  count: 124724
  probability: 0.37360076443118473
- from: 'T'
  to: 'G'
  count: 26562
  probability: 0.07956434611479049
- from: 'T'
  to: 'T'
  count: 158067
  probability: 0.4734770535850684