Commit Graph

2 Commits

Author SHA1 Message Date
Eric Coissac 8c17bf958b refactor: centralize k-mer config and introduce packed sequences
Centralize k-mer and minimizer configuration using a thread-safe global module, and replace manual bit-packing with a memory-efficient `PackedSeq` type. Refactor core sequence and k-mer types to use compile-time length enforcement and centralized hashing. Introduce a new De Bruijn graph implementation with compact node encoding and traversal iterators. Update I/O, partitioning, and builder modules to align with the new architecture, and add the `xxhash-rust` dependency.
2026-05-08 06:34:24 +08:00
Eric Coissac de3f9b16cf first implementation but far to be optimal 2026-04-19 12:17:16 +02:00