Push tmpsxsztwpxl #21

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coissac merged 2 commits from push-tmpsxsztwpxl into main 2026-06-09 13:31:25 +00:00

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coissac commented 2026-06-09 13:31:06 +00:00

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coissac added 2 commits 2026-06-09 13:31:06 +00:00

feat: add select command for genome column projection and aggregation ... e66adef23d

Introduces the `select` CLI command to project and aggregate genome-level k-mer data by column. Adds `filter` as an alias for `rebuild`. The implementation uses parallel partition processing, supports metadata-driven grouping with configurable aggregation operators, and performs atomic in-place rewrites or filtered exports. Updates documentation and navigation accordingly.

refactor: rename rebuild subcommand to filter ... 970460be42

Rename the `rebuild` CLI subcommand to `filter` to better reflect its primary purpose of row-level selection and k-mer filtering. Update all associated CLI arguments, logging, error messages, and module registrations accordingly. Introduce a dedicated `Rebuild` subcommand for index compaction, fully decoupling it from the filtering logic. Also refine related documentation to align with the new naming and semantics.

coissac merged commit 94e0a370b3 into main 2026-06-09 13:31:25 +00:00

coissac deleted branch push-tmpsxsztwpxl 2026-06-09 13:31:25 +00:00

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Reference: OBIKmers/obikmer#21