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    coissac released this 2026-07-08 17:37:26 +00:00 | 70 commits to main since this release

    refactor: remove equivalence class folding from entropy pipeline

    Removes circular-reverse complement machinery and explicit k-mer canonicalization across the entropy pipeline. Frequency tallying and Shannon entropy computation now operate directly on raw k-mer values, eliminating prior score inflation and alignment-dependent artifacts while preserving orientation invariance. Updates build scripts to generate normalized lookup tables for k-mer lengths 1–6, restricts the public API to EntropyTracker, and bumps crate versions. Documentation is updated to reflect the simplified raw-value approach and revised module structure.

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