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• v1.1.40 f5e508ed33

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  v1.1.40 Stable

  coissac released this 2026-08-10 23:01:39 +00:00 | 61 commits to main since this release

  feat: add multi-genome SNP pseudo-alignment and CLI export

  Introduces a SnpAlignment struct and helper methods to construct per-genome SNP pseudo-alignments from sibling k-mer data, filtering monomorphic families and encoding bases as IUPAC ambiguity codes. Exposes the type at the crate root for simplified imports. Adds a --snp CLI flag to compute and export these alignments as an IUPAC-coded FASTA file. Updates theory documentation to propose a multi-genome framing approach for joint phylogenetic inference, resolving pairwise correspondence ambiguities through positional homology and partial coverage thresholds. Bumps crate version to 1.1.40.

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  • obikmer-linux-x86_64
    11 MiB

    2026-08-10 23:20:47 +00:00
  • obikmer-macos-arm64
    15 MiB

    2026-08-10 23:12:14 +00:00
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  • Source Code (TAR.GZ)