Eric Coissac
4736a7b6de
Replace in-memory hashing with a disk-backed external merge sort and `PersistentCompactIntVec` to drastically reduce peak RAM. Unify both phases using a custom `PtrHash` MPHF, eliminating `GOFunction` and `boomphf`. Introduce a concrete three-step `count_partition()` pipeline with adaptive chunk sizing based on available system memory. Update dependencies to `memmap2`, `ptr_hash`, and `obicompactvec`. Additionally, document strict genomics-only memory constraints and enforce an architectural feedback workflow requiring explicit user authorization before structural changes.
353 B
353 B
Memory Index
- Project domain — obikmer est pour la génomique (génomes individuels), pas la métagénomique
- No architectural decisions without authorization — toute décision architecturale (mémoire, algo, structure) requiert l'accord explicite de l'utilisateur avant toute action