Eric Coissac
1f9c6388eb
Adds a new binary that validates bit-level consistency between dense and sparse K-mer index representations by sampling slots across partitions and reporting discrepancies. Refactors sibling cache matrix initialization into a centralized factory method to simplify control flow and standardize error handling. Introduces diagnostic configurations, benchmark scripts, and an ignored test case to support k-mer resolution analysis.
43 lines
668 B
Plaintext
43 lines
668 B
Plaintext
.venv/
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src/target
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data-stress
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*.fasta
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*.fasta.gz
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*.zst
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*.zst.meta
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*.pb
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./**/*.json
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*.bin
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*.log
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*.csv
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Betula_exilis--IGA-24-33
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benchmark/genomes
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benchmark/genomes_orig
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benchmark/simulated_data
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benchmark/specimen_index_presence
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benchmark/specimen_index_count
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benchmark/global_index_presence
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benchmark/global_index_presence_orig
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benchmark/global_index_presence_sav
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benchmark/all_specific
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benchmark/global_index_count
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benchmark/stats
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benchmark/reference_index
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benchmark/reference_dist
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benchmark/obikmer_dist
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benchmark/specific_index_count
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benchmark/specific_index_presence
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TNT
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phyg
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biblio
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*.tnt
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*.tre
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*.phy
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*.treefile
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*.bionj
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*.iqtree
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*.mldist
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*.parstree
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*.ckp.gz
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*.model
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