obikmer

T

Eric Coissac 21ddbf1674 feat: add seq_hash() and refactor canonical hashing

Introduce `. seqhash(&self)` for direct XXH3-64 sequencing of packed bytes, and remove legacy `.hash()` method that used conditional canonicalization via revcomp. Also update partitioning logic to use `sk.hashseq_hash()` and deduplicate imports.

2026-05-01 10:35:57 +02:00

.zed

refactor: implement RoutableSuperKmer and update k-mer indexing pipeline

2026-05-01 09:33:26 +02:00

data-stress

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

doc

refactor: implement RoutableSuperKmer and update k-mer indexing pipeline

2026-05-01 09:33:26 +02:00

docmd

refactor: implement RoutableSuperKmer and update k-mer indexing pipeline

2026-05-01 09:33:26 +02:00

scripts

refactor: implement RoutableSuperKmer and update k-mer indexing pipeline

2026-05-01 09:33:26 +02:00

src

feat: add seq_hash() and refactor canonical hashing

2026-05-01 10:35:57 +02:00

.DS_Store

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

.gitignore

refactor: implement RoutableSuperKmer and update k-mer indexing pipeline

2026-05-01 09:33:26 +02:00

Cargo.lock

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

CLAUDE.md

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

debug.log

Refactor: Extract utility function for string reversal

2026-04-30 06:58:46 +02:00

kmer_spectrum_raw.json

refactor: implement RoutableSuperKmer and update k-mer indexing pipeline

2026-05-01 09:33:26 +02:00

Makefile

Refactor: Simplify user authentication flow

2026-04-28 08:38:26 +02:00

mkdocs.yml

refactor: implement RoutableSuperKmer and update k-mer indexing pipeline

2026-05-01 09:33:26 +02:00

profile.json.gz

Refactor: Simplify user authentication flow

2026-04-28 08:38:26 +02:00

README.md

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

test.sk.fasta

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

xxx.HTML

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

README.md

toto

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