obikmer

T

coissac 3138f6382c Merge pull request 'Push nvyqwlpspwvl' (#11 ) from push-nvyqwlpspwvl into main

Reviewed-on: #11

2026-05-29 07:21:58 +00:00

.kilo/plans

harden obiskio error handling with explicit variants and bounds checking

2026-05-09 18:30:19 +08:00

.zed

refactor: implement RoutableSuperKmer and update k-mer indexing pipeline

2026-05-01 09:33:26 +02:00

data-stress

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

doc

docs: clarify MPHF indexing, storage layout, and distance traits

2026-05-17 15:59:10 +08:00

docmd

refactor: migrate pipeline to NucPage-based stream processing

2026-05-29 09:10:25 +02:00

memory

refactor: restructure k-mer partitioning pipeline for memory efficiency

2026-05-17 16:08:47 +08:00

scripts

feat: implement persistent layered index and chunked binary format

2026-05-09 17:38:29 +08:00

src

feat: implement approximate k-mer indexing and optimize query

2026-05-29 09:20:44 +02:00

.DS_Store

feat: introduce genome metadata tracking and CSV export

2026-05-22 09:35:20 +02:00

.gitignore

refactor: implement RoutableSuperKmer and update k-mer indexing pipeline

2026-05-01 09:33:26 +02:00

Cargo.lock

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

CLAUDE.md

refactor: optimize MPHF construction and update legacy guidelines

2026-05-26 10:54:59 +02:00

debug.log

Refactor: Extract utility function for string reversal

2026-04-30 06:58:46 +02:00

kmer_spectrum_raw.json

refactor: implement RoutableSuperKmer and update k-mer indexing pipeline

2026-05-01 09:33:26 +02:00

Makefile

Refactor: Simplify user authentication flow

2026-04-28 08:38:26 +02:00

mkdocs.yml

feat: optimize unitig index and document evidence elimination

2026-05-23 12:53:42 +02:00

obikmer 2026-05-20 12.53 profile.json.gz

feat(obikmer): add index subcommand for kmer counting pipeline

2026-05-20 18:25:12 +02:00

profile.json.gz

Refactor: Simplify user authentication flow

2026-04-28 08:38:26 +02:00

README.md

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

test.sk.fasta

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

TODO.md

feat: add evidence metadata and configurable k-mer parameters

2026-05-23 13:10:18 +02:00

xxx.HTML

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

README.md

toto

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