OBIKmers/obikmer - obikmer - Gitea: Git with a cup of tea

OBIKmers/obikmer

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Eric Coissac 35840b9d73 refactor: simplify unitig iteration logic and API

Refactors the `start_iter` function to separate chain/cycle detection into two passes, consolidates visited marking logic internally in `next_unitig_kmer`, and streamlines the public API by removing redundant methods, updating iteration parameters to `(start_first_next)`, and eliminating external state like `at_start`.

2026-05-02 16:31:08 +02:00

refactor: implement RoutableSuperKmer and update k-mer indexing pipeline

2026-05-01 09:33:26 +02:00

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

refactor: implement RoutableSuperKmer and update k-mer indexing pipeline

2026-05-01 09:33:26 +02:00

feat: enforce canonical k-mer representation throughout the codebase

2026-05-02 16:31:08 +02:00

refactor: implement RoutableSuperKmer and update k-mer indexing pipeline

2026-05-01 09:33:26 +02:00

refactor: simplify unitig iteration logic and API

2026-05-02 16:31:08 +02:00

.DS_Store

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

.gitignore

refactor: implement RoutableSuperKmer and update k-mer indexing pipeline

2026-05-01 09:33:26 +02:00

Cargo.lock

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

CLAUDE.md

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

debug.log

Refactor: Extract utility function for string reversal

2026-04-30 06:58:46 +02:00

kmer_spectrum_raw.json

refactor: implement RoutableSuperKmer and update k-mer indexing pipeline

2026-05-01 09:33:26 +02:00

Makefile

Refactor: Simplify user authentication flow

2026-04-28 08:38:26 +02:00

mkdocs.yml

refactor: implement RoutableSuperKmer and update k-mer indexing pipeline

2026-05-01 09:33:26 +02:00

profile.json.gz

Refactor: Simplify user authentication flow

2026-04-28 08:38:26 +02:00

README.md

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

test.sk.fasta

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

xxx.HTML

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

README.md

toto

v1.3.5

Latest

2026-09-12 05:49:49 +00:00

HTML 52.6%

Rust 42.5%

Python 1.7%

Shell 1.2%

Makefile 1%

Other 1%