OBIKmers/obikmer
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Eric Coissac 35840b9d73 refactor: simplify unitig iteration logic and API 
Refactors the `start_iter` function to separate chain/cycle detection into two passes, consolidates visited marking logic internally in `next_unitig_kmer`, and streamlines the public API by removing redundant methods, updating iteration parameters to `(start_first_next)`, and eliminating external state like `at_start`.
2026-05-02 16:31:08 +02:00
.zed
refactor: implement RoutableSuperKmer and update k-mer indexing pipeline
2026-05-01 09:33:26 +02:00
data-stress
first implementation but far to be optimal
2026-04-19 12:17:16 +02:00
doc
refactor: implement RoutableSuperKmer and update k-mer indexing pipeline
2026-05-01 09:33:26 +02:00
docmd
feat: enforce canonical k-mer representation throughout the codebase
2026-05-02 16:31:08 +02:00
scripts
refactor: implement RoutableSuperKmer and update k-mer indexing pipeline
2026-05-01 09:33:26 +02:00
src
refactor: simplify unitig iteration logic and API
2026-05-02 16:31:08 +02:00
.DS_Store
first implementation but far to be optimal
2026-04-19 12:17:16 +02:00
.gitignore
refactor: implement RoutableSuperKmer and update k-mer indexing pipeline
2026-05-01 09:33:26 +02:00
Cargo.lock
first implementation but far to be optimal
2026-04-19 12:17:16 +02:00
CLAUDE.md
first implementation but far to be optimal
2026-04-19 12:17:16 +02:00
debug.log
Refactor: Extract utility function for string reversal
2026-04-30 06:58:46 +02:00
kmer_spectrum_raw.json
refactor: implement RoutableSuperKmer and update k-mer indexing pipeline
2026-05-01 09:33:26 +02:00
Makefile
Refactor: Simplify user authentication flow
2026-04-28 08:38:26 +02:00
mkdocs.yml
refactor: implement RoutableSuperKmer and update k-mer indexing pipeline
2026-05-01 09:33:26 +02:00
profile.json.gz
Refactor: Simplify user authentication flow
2026-04-28 08:38:26 +02:00
README.md
first implementation but far to be optimal
2026-04-19 12:17:16 +02:00
test.sk.fasta
first implementation but far to be optimal
2026-04-19 12:17:16 +02:00
xxx.HTML
first implementation but far to be optimal
2026-04-19 12:17:16 +02:00

README.md

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Readme 226 MiB
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TeX 2.4%
Python 1%
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