OBIKmers/obikmer - obikmer - Gitea: Git with a cup of tea

OBIKmers/obikmer

T

Eric Coissac 58391886a3 🔧 Replace degenerate minimizer logic with hash-based random ordering

- Add `hash` field to MmerItem for stable, randomized minimizer ordering
- Introduce hash_mMER() using mix64 with XOR seed to avoid fixed points (e.g., poly-A/T)
- Remove is_degenerate() and minimizer_worse(), simplifying comparison to hash-only
- Update push logic: compare hashes instead of canonical values with degeneracy checks

2026-04-27 20:19:43 +02:00

Betula_exilis--IGA-24-33

.gitignore: ignore zstandard-compressed files

2026-04-27 16:56:15 +02:00

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

🔧 Replace degenerate minimizer logic with hash-based random ordering

2026-04-27 20:19:43 +02:00

🔧 Replace degenerate minimizer logic with hash-based random ordering

2026-04-27 20:19:43 +02:00

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

.DS_Store

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

.gitignore

🔧 Replace degenerate minimizer logic with hash-based random ordering

2026-04-27 20:19:43 +02:00

Cargo.lock

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

CLAUDE.md

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

Makefile

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

mkdocs.yml

🔧 Replace degenerate minimizer logic with hash-based random ordering

2026-04-27 20:19:43 +02:00

profile.json.gz

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

README.md

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

test.sk.fasta

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

xxx.HTML

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

README.md

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