OBIKmers/obikmer - obikmer - Gitea: Git with a cup of tea

OBIKmers/obikmer

T

Eric Coissac 5e77ea4eba 🗑️ Refactor entropy and minimizer logic into RollingStat

- Remove `entropy.rs`, `minimizer.rs` and `window.rs`; consolidate logic into new module
- Introduce unified state management in RollingStat with incremental entropy tracking and canonical minimizer computation via monotone deque
- Update SuperKmerIter to use RollingStat instead of separate components, simplifying iteration and state transitions
- Add `*.fasta` to .gitignore for generated FASTA outputs

2026-04-20 16:45:57 +02:00

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

🗑️ Refactor entropy and minimizer logic into RollingStat

2026-04-20 16:45:57 +02:00

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

.DS_Store

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

.gitignore

🗑️ Refactor entropy and minimizer logic into RollingStat

2026-04-20 16:45:57 +02:00

Cargo.lock

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

CLAUDE.md

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

Makefile

first implementation but far to be optimal

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mkdocs.yml

first implementation but far to be optimal

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profile.json.gz

first implementation but far to be optimal

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README.md

first implementation but far to be optimal

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test.sk.fasta

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

xxx.HTML

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

README.md

toto

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