Eric Coissac 640f29725b Optimize sparse bit matrix packing to avoid intermediate copies ...

Refactor `pack_sparse_bit_matrix` to conditionally open either a packed or columnar dense representation based on file existence. This eliminates the previous unconditional pre-conversion step that forced a full packed copy. Update cleanup logic and add tests to verify direct transposition, proper file handling, and idempotency for both formats.

2026-08-20 14:38:20 +02:00

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obicompactvec

Optimize sparse bit matrix packing to avoid intermediate copies

2026-08-20 14:38:20 +02:00

obidebruinj

chore: update dependencies and adapt to updated crate APIs

2026-08-20 13:45:41 +02:00

obifastwrite

refactor: extract obikindex crate and remove deprecated CLI commands

2026-05-20 18:54:12 +02:00

obikentropy

large refactoring

2026-08-17 09:28:53 +02:00

obikindex

chore: update dependencies and adapt to updated crate APIs

2026-08-20 13:45:41 +02:00

obikmer

chore: bump obikmer to 1.2.1 and disable obikindex default features

2026-08-17 13:32:30 +02:00

obikpartitionner

Introduce unified nonzero_iter API across matrix types

2026-08-20 14:07:09 +02:00

obikphylo

chore: update dependencies and adapt to updated crate APIs

2026-08-20 13:45:41 +02:00

obikrope

Add modular data structures, parallel pipelines, and system profiling

2026-08-14 14:20:08 +02:00

obikseq

Extract phylogenetic sibling logic into new obikphylo crate

2026-08-16 14:30:34 +02:00

obilayeredmap

chore: update dependencies and adapt to updated crate APIs

2026-08-20 13:45:41 +02:00

obipipeline

Add modular data structures, parallel pipelines, and system profiling

2026-08-14 14:20:08 +02:00

obiread

chore: update dependencies and adapt to updated crate APIs

2026-08-20 13:45:41 +02:00

obiskbuilder

feat: implement per-k-mer sibling counts and central neighbor generation

2026-08-10 15:01:59 +02:00

obiskio

chore: update dependencies and adapt to updated crate APIs

2026-08-20 13:45:41 +02:00

obisys

chore: update dependencies and adapt to updated crate APIs

2026-08-20 13:45:41 +02:00

obitaxonomy

feat: introduce obitaxonomy crate for hierarchical taxonomy parsing

2026-06-22 10:24:04 +02:00

Cargo.lock

refactor: rename batch retrieval methods and update common_traits

2026-08-20 14:15:28 +02:00

Cargo.toml

Consolidate compare_sparse as example and clean up project artifacts

2026-08-20 12:48:42 +02:00