OBIKmers/obikmer - obikmer - Gitea: Git with a cup of tea

OBIKmers/obikmer

T

Eric Coissac 664d0216b5 📦 Add obipipeline crate and refactor path handling

- Introduce new `obipackage` library with pipeline stages, scheduler and worker pool
- Refactor path expansion in `obiread`: replace old list_of_files with new PathIter iterator
- Add MIME type detection using `infer` crate (fastq/fasta)
- Update dependencies in Cargo.lock: add bumpalo, byteorder, cfb (with deps), fnv,
  infer, js-sys/uuid/wasm-bindgen ecosystem
- Fix formatting and improve tests in SuperKmer (canonical, revcomp)
  * Note: edition = "2024" in obipipeline/Cargo.toml is invalid; should be 2021

2026-04-23 21:06:11 +02:00

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

📦 Add obipipeline crate and refactor path handling

2026-04-23 21:06:11 +02:00

📦 Add obipipeline crate and refactor path handling

2026-04-23 21:06:11 +02:00

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

.DS_Store

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

.gitignore

🗑️ Refactor entropy and minimizer logic into RollingStat

2026-04-20 16:45:57 +02:00

Cargo.lock

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

CLAUDE.md

first implementation but far to be optimal

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Makefile

first implementation but far to be optimal

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mkdocs.yml

first implementation but far to be optimal

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profile.json.gz

first implementation but far to be optimal

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README.md

first implementation but far to be optimal

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test.sk.fasta

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

xxx.HTML

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

README.md

toto

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