OBIKmers/obikmer
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Eric Coissac 7bc9aa9af5 refactor(packed_seq): unify kmer iterators with generic storage 
Merge PackedSeqKmerIter and OwnedPackedSeqKmerIter into a single generic PackedSeqKmerIter<S> parameterized over the storage type. Add an AsRef<PackedSeq> implementation to PackedSeq to enable this abstraction, allowing the zero-allocation sliding-window kmer iterator to seamlessly accept both borrowed and owned sequences without code duplication.
2026-05-11 11:15:37 +08:00
.kilo/plans
harden obiskio error handling with explicit variants and bounds checking
2026-05-09 18:30:19 +08:00
.zed
refactor: implement RoutableSuperKmer and update k-mer indexing pipeline
2026-05-01 09:33:26 +02:00
data-stress
first implementation but far to be optimal
2026-04-19 12:17:16 +02:00
doc
refactor: implement RoutableSuperKmer and update k-mer indexing pipeline
2026-05-01 09:33:26 +02:00
docmd
feat: implement persistent layered index and chunked binary format
2026-05-09 17:38:29 +08:00
scripts
feat: implement persistent layered index and chunked binary format
2026-05-09 17:38:29 +08:00
src
refactor(packed_seq): unify kmer iterators with generic storage
2026-05-11 11:15:37 +08:00
.DS_Store
first implementation but far to be optimal
2026-04-19 12:17:16 +02:00
.gitignore
refactor: implement RoutableSuperKmer and update k-mer indexing pipeline
2026-05-01 09:33:26 +02:00
Cargo.lock
first implementation but far to be optimal
2026-04-19 12:17:16 +02:00
CLAUDE.md
refactor: centralize k-mer config and introduce packed sequences
2026-05-08 06:34:24 +08:00
debug.log
Refactor: Extract utility function for string reversal
2026-04-30 06:58:46 +02:00
kmer_spectrum_raw.json
refactor: implement RoutableSuperKmer and update k-mer indexing pipeline
2026-05-01 09:33:26 +02:00
Makefile
Refactor: Simplify user authentication flow
2026-04-28 08:38:26 +02:00
mkdocs.yml
feat: implement persistent layered index and chunked binary format
2026-05-09 17:38:29 +08:00
profile.json.gz
Refactor: Simplify user authentication flow
2026-04-28 08:38:26 +02:00
README.md
first implementation but far to be optimal
2026-04-19 12:17:16 +02:00
test.sk.fasta
first implementation but far to be optimal
2026-04-19 12:17:16 +02:00
xxx.HTML
first implementation but far to be optimal
2026-04-19 12:17:16 +02:00

README.md

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