OBIKmers/obikmer - obikmer - Gitea: Git with a cup of tea

OBIKmers/obikmer

T

Eric Coissac 7bc9aa9af5 refactor(packed_seq): unify kmer iterators with generic storage

Merge PackedSeqKmerIter and OwnedPackedSeqKmerIter into a single generic PackedSeqKmerIter<S> parameterized over the storage type. Add an AsRef<PackedSeq> implementation to PackedSeq to enable this abstraction, allowing the zero-allocation sliding-window kmer iterator to seamlessly accept both borrowed and owned sequences without code duplication.

2026-05-11 11:15:37 +08:00

harden obiskio error handling with explicit variants and bounds checking

2026-05-09 18:30:19 +08:00

refactor: implement RoutableSuperKmer and update k-mer indexing pipeline

2026-05-01 09:33:26 +02:00

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

refactor: implement RoutableSuperKmer and update k-mer indexing pipeline

2026-05-01 09:33:26 +02:00

feat: implement persistent layered index and chunked binary format

2026-05-09 17:38:29 +08:00

feat: implement persistent layered index and chunked binary format

2026-05-09 17:38:29 +08:00

refactor(packed_seq): unify kmer iterators with generic storage

2026-05-11 11:15:37 +08:00

.DS_Store

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

.gitignore

refactor: implement RoutableSuperKmer and update k-mer indexing pipeline

2026-05-01 09:33:26 +02:00

Cargo.lock

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

CLAUDE.md

refactor: centralize k-mer config and introduce packed sequences

2026-05-08 06:34:24 +08:00

debug.log

Refactor: Extract utility function for string reversal

2026-04-30 06:58:46 +02:00

kmer_spectrum_raw.json

refactor: implement RoutableSuperKmer and update k-mer indexing pipeline

2026-05-01 09:33:26 +02:00

Makefile

Refactor: Simplify user authentication flow

2026-04-28 08:38:26 +02:00

mkdocs.yml

feat: implement persistent layered index and chunked binary format

2026-05-09 17:38:29 +08:00

profile.json.gz

Refactor: Simplify user authentication flow

2026-04-28 08:38:26 +02:00

README.md

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

test.sk.fasta

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

xxx.HTML

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

README.md

toto

v1.2.2

Latest

2026-08-17 11:33:43 +00:00

HTML 56%

Rust 38.9%

Python 2%

TeX 1.2%

Makefile 1%

Other 0.9%