OBIKmers/obikmer - obikmer - Gitea: Git with a cup of tea

OBIKmers/obikmer

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Eric Coissac 97e65bd831 ♻️ refactor pipeline architecture and fix macOS memory detection

- Replace WorkerPool-based pipelines with typed `Pipe` abstraction in obipipeline
  - Introduce Pipe/PipeIter for composable, sourceless/sink-less pipelines
- Update partition and superkmer commands to use new Pipe API via make_pipe!
  - Remove Arc<Mutex<...>> patterns; simplify state management
- Fix macOS available_memory() returning 0 by falling back to half total memory in dereplicate()
- Remove unused `format: "zstd"` field from partition.meta

2026-04-30 07:04:03 +02:00

Betula_exilis--IGA-24-33

♻️ refactor pipeline architecture and fix macOS memory detection

2026-04-30 07:04:03 +02:00

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

Refactor: Extract utility function for string reversal

2026-04-30 06:58:46 +02:00

Refactor: Extract utility function for string reversal

2026-04-30 06:58:46 +02:00

♻️ refactor pipeline architecture and fix macOS memory detection

2026-04-30 07:04:03 +02:00

Refactor: Extract utility function for string reversal

2026-04-30 06:58:46 +02:00

.DS_Store

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

.gitignore

✨ add PhantomData import for generic type safety

2026-04-30 07:04:03 +02:00

Cargo.lock

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

CLAUDE.md

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

debug.log

Refactor: Extract utility function for string reversal

2026-04-30 06:58:46 +02:00

Makefile

Refactor: Simplify user authentication flow

2026-04-28 08:38:26 +02:00

mkdocs.yml

🔧 Replace degenerate minimizer logic with hash-based random ordering

2026-04-27 20:19:43 +02:00

profile.json.gz

Refactor: Simplify user authentication flow

2026-04-28 08:38:26 +02:00

README.md

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

test.sk.fasta

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

xxx.HTML

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

README.md

toto

v1.3.5

Latest

2026-09-12 05:49:49 +00:00

HTML 52.6%

Rust 42.5%

Python 1.7%

Shell 1.2%

Makefile 1%

Other 1%