OBIKmers/obikmer
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Eric Coissac 9e5af6b5a5 refactor(pool): optimize write batch and LRU cache handling 
Replaces the `write_one` loop with threshold-based draining and inlines metadata updates. Explicitly promotes accessed entries to MRU during flush and drain operations to prevent premature LRU eviction. Updates comments to clarify two-phase locking and MRU promotion semantics.
2026-05-09 19:00:31 +08:00
.kilo/plans
harden obiskio error handling with explicit variants and bounds checking
2026-05-09 18:30:19 +08:00
.zed
refactor: implement RoutableSuperKmer and update k-mer indexing pipeline
2026-05-01 09:33:26 +02:00
data-stress
first implementation but far to be optimal
2026-04-19 12:17:16 +02:00
doc
refactor: implement RoutableSuperKmer and update k-mer indexing pipeline
2026-05-01 09:33:26 +02:00
docmd
feat: implement persistent layered index and chunked binary format
2026-05-09 17:38:29 +08:00
scripts
feat: implement persistent layered index and chunked binary format
2026-05-09 17:38:29 +08:00
src
refactor(pool): optimize write batch and LRU cache handling
2026-05-09 19:00:31 +08:00
.DS_Store
first implementation but far to be optimal
2026-04-19 12:17:16 +02:00
.gitignore
refactor: implement RoutableSuperKmer and update k-mer indexing pipeline
2026-05-01 09:33:26 +02:00
Cargo.lock
first implementation but far to be optimal
2026-04-19 12:17:16 +02:00
CLAUDE.md
refactor: centralize k-mer config and introduce packed sequences
2026-05-08 06:34:24 +08:00
debug.log
Refactor: Extract utility function for string reversal
2026-04-30 06:58:46 +02:00
kmer_spectrum_raw.json
refactor: implement RoutableSuperKmer and update k-mer indexing pipeline
2026-05-01 09:33:26 +02:00
Makefile
Refactor: Simplify user authentication flow
2026-04-28 08:38:26 +02:00
mkdocs.yml
feat: implement persistent layered index and chunked binary format
2026-05-09 17:38:29 +08:00
profile.json.gz
Refactor: Simplify user authentication flow
2026-04-28 08:38:26 +02:00
README.md
first implementation but far to be optimal
2026-04-19 12:17:16 +02:00
test.sk.fasta
first implementation but far to be optimal
2026-04-19 12:17:16 +02:00
xxx.HTML
first implementation but far to be optimal
2026-04-19 12:17:16 +02:00

README.md

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Description
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Readme 226 MiB
Languages
Rust 89.4%
HTML 5.9%
TeX 2.4%
Python 1%
Shell 0.9%
Other 0.4%