OBIKmers/obikmer - obikmer - Gitea: Git with a cup of tea

OBIKmers/obikmer

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Eric Coissac 9e5af6b5a5 refactor(pool): optimize write batch and LRU cache handling

Replaces the `write_one` loop with threshold-based draining and inlines metadata updates. Explicitly promotes accessed entries to MRU during flush and drain operations to prevent premature LRU eviction. Updates comments to clarify two-phase locking and MRU promotion semantics.

2026-05-09 19:00:31 +08:00

harden obiskio error handling with explicit variants and bounds checking

2026-05-09 18:30:19 +08:00

refactor: implement RoutableSuperKmer and update k-mer indexing pipeline

2026-05-01 09:33:26 +02:00

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

refactor: implement RoutableSuperKmer and update k-mer indexing pipeline

2026-05-01 09:33:26 +02:00

feat: implement persistent layered index and chunked binary format

2026-05-09 17:38:29 +08:00

feat: implement persistent layered index and chunked binary format

2026-05-09 17:38:29 +08:00

refactor(pool): optimize write batch and LRU cache handling

2026-05-09 19:00:31 +08:00

.DS_Store

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

.gitignore

refactor: implement RoutableSuperKmer and update k-mer indexing pipeline

2026-05-01 09:33:26 +02:00

Cargo.lock

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

CLAUDE.md

refactor: centralize k-mer config and introduce packed sequences

2026-05-08 06:34:24 +08:00

debug.log

Refactor: Extract utility function for string reversal

2026-04-30 06:58:46 +02:00

kmer_spectrum_raw.json

refactor: implement RoutableSuperKmer and update k-mer indexing pipeline

2026-05-01 09:33:26 +02:00

Makefile

Refactor: Simplify user authentication flow

2026-04-28 08:38:26 +02:00

mkdocs.yml

feat: implement persistent layered index and chunked binary format

2026-05-09 17:38:29 +08:00

profile.json.gz

Refactor: Simplify user authentication flow

2026-04-28 08:38:26 +02:00

README.md

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

test.sk.fasta

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

xxx.HTML

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

README.md

toto

v1.3.5

Latest

2026-09-12 05:49:49 +00:00

HTML 52.6%

Rust 42.5%

Python 1.7%

Shell 1.2%

Makefile 1%

Other 1%