OBIKmers/obikmer
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Eric Coissac 8bb1d52514
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disable default features for obisys dependency 
Update obisys dependency configuration across multiple crates to explicitly set default-features = false. This restricts compilation to only explicitly enabled feature flags, affecting build resolution and potentially compile-time paths or binary size. Also updates the obikmer package version to 1.3.1.
2026-08-29 08:13:49 +02:00
..
obicompactvec
feat: add batched int group stats API and expand benchmark variants
2026-08-28 23:37:16 +02:00
obidebruinj
chore: update dependencies and adapt to updated crate APIs
2026-08-20 13:45:41 +02:00
obifastwrite
feat: add phylogenetic sampling, masking, and plain FASTA writer
2026-08-28 20:54:51 +02:00
obikalgorithm
Introduce obikalgorithm crate to unify pipeline algorithms
2026-08-21 22:03:08 +02:00
obikdump
disable default features for obisys dependency
2026-08-29 08:13:49 +02:00
obikentropy
large refactoring
2026-08-17 09:28:53 +02:00
obikfilter
disable default features for obisys dependency
2026-08-29 08:13:49 +02:00
obikidxcache
Add per-family Shannon entropy calculation and reporting
2026-08-28 20:45:47 +02:00
obikindex
disable default features for obisys dependency
2026-08-29 08:13:49 +02:00
obikindexer
disable default features for obisys dependency
2026-08-29 08:13:49 +02:00
obikmer
disable default features for obisys dependency
2026-08-29 08:13:49 +02:00
obikmerge
disable default features for obisys dependency
2026-08-29 08:13:49 +02:00
obikphylo
disable default features for obisys dependency
2026-08-29 08:13:49 +02:00
obikquery
refactor: Shift KmerIndex ownership to Arc for thread-safe sharing
2026-08-28 19:32:45 +02:00
obikrebuild
disable default features for obisys dependency
2026-08-29 08:13:49 +02:00
obikrope
Add modular data structures, parallel pipelines, and system profiling
2026-08-14 14:20:08 +02:00
obikselect
disable default features for obisys dependency
2026-08-29 08:13:49 +02:00
obikseq
Extract phylogenetic sibling logic into new obikphylo crate
2026-08-16 14:30:34 +02:00
obikstats
Introduce concurrency-bounded parallel processing for index cache layers
2026-08-28 20:20:12 +02:00
obipipeline
Introduce concurrency-bounded parallel processing for index cache layers
2026-08-28 20:20:12 +02:00
obiread
chore: update dependencies and adapt to updated crate APIs
2026-08-20 13:45:41 +02:00
obiskbuilder
feat: implement per-k-mer sibling counts and central neighbor generation
2026-08-10 15:01:59 +02:00
obiskio
Add unitig streaming iterators and estimate CLI subcommand
2026-08-22 17:14:07 +02:00
obisys
Remove in-place flag, optimize presence counting, and handle NUMA panics
2026-08-28 23:16:37 +02:00
obitaxonomy
feat: introduce obitaxonomy crate for hierarchical taxonomy parsing
2026-06-22 10:24:04 +02:00
Cargo.lock
disable default features for obisys dependency
2026-08-29 08:13:49 +02:00
Cargo.toml
Rename CLI to obikmer2, add phylo commands, and unify index caching
2026-08-28 22:34:46 +02:00