OBIKmers/obikmer
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d2548e8c33d6c18d1282a7a3c8bcc5e9711ee2c4
obikmer/src
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Eric Coissac d2548e8c33 feat(progress): implement configurable ETA throttling 
Introduces timing constants and atomic fields to control ETA calculation intervals. Replaces the static template placeholder with dynamic messages, delegating formatting to a new helper that applies throttling thresholds and suppresses automatic updates during custom message hold periods.
2026-08-16 14:32:25 +02:00
..
obicompactvec
Add cache-optimized batch retrieval and sub-matrix methods
2026-08-16 14:01:35 +02:00
obidebruinj
Add modular data structures, parallel pipelines, and system profiling
2026-08-14 14:20:08 +02:00
obifastwrite
refactor: extract obikindex crate and remove deprecated CLI commands
2026-05-20 18:54:12 +02:00
obikentropy
refactor: remove equivalence class folding from entropy pipeline
2026-07-08 19:36:30 +02:00
obikindex
Extract phylogenetic sibling logic into new obikphylo crate
2026-08-16 14:30:34 +02:00
obikmer
Extract phylogenetic sibling logic into new obikphylo crate
2026-08-16 14:30:34 +02:00
obikpartitionner
fix: respect --force flag during index and partition creation
2026-08-16 11:37:26 +02:00
obikphylo
Extract phylogenetic sibling logic into new obikphylo crate
2026-08-16 14:30:34 +02:00
obikrope
Add modular data structures, parallel pipelines, and system profiling
2026-08-14 14:20:08 +02:00
obikseq
Extract phylogenetic sibling logic into new obikphylo crate
2026-08-16 14:30:34 +02:00
obilayeredmap
Extract phylogenetic sibling logic into new obikphylo crate
2026-08-16 14:30:34 +02:00
obipipeline
Add modular data structures, parallel pipelines, and system profiling
2026-08-14 14:20:08 +02:00
obiread
Add modular data structures, parallel pipelines, and system profiling
2026-08-14 14:20:08 +02:00
obiskbuilder
feat: implement per-k-mer sibling counts and central neighbor generation
2026-08-10 15:01:59 +02:00
obiskio
Replace slot-based indexing with iteration order and stream k-mers
2026-08-16 14:07:22 +02:00
obisys
feat(progress): implement configurable ETA throttling
2026-08-16 14:32:25 +02:00
obitaxonomy
feat: introduce obitaxonomy crate for hierarchical taxonomy parsing
2026-06-22 10:24:04 +02:00
Cargo.lock
Extract phylogenetic sibling logic into new obikphylo crate
2026-08-16 14:30:34 +02:00
Cargo.toml
Extract phylogenetic sibling logic into new obikphylo crate
2026-08-16 14:30:34 +02:00
profile.json.gz
🗑️ Refactor entropy and minimizer logic into RollingStat
2026-04-20 16:45:57 +02:00