OBIKmers/obikmer - obikmer - Gitea: Git with a cup of tea

OBIKmers/obikmer

T

Eric Coissac d4e4289aff (feat): refactor superkmer to use obipipeline with flat transforms

- Replace crossbeam-channel-based threading model
- Introduce obipipeline crate with Stage::Transform/Flat support  
- Replace single input + format detection by multiple inputs via PathIter
- Implement pipeline stages: open_chunks → normalize → build_superkmers (flat) + write_batch
- Add SharedFlatFn for 1→N transformations with delta tracking in scheduler loop

2026-04-24 21:08:09 +02:00

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

🔖 Add obipipeline parallel pipeline library

2026-04-24 17:10:07 +02:00

(feat): refactor superkmer to use obipipeline with flat transforms

2026-04-24 21:08:09 +02:00

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

.DS_Store

first implementation but far to be optimal

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.gitignore

🗑️ Refactor entropy and minimizer logic into RollingStat

2026-04-20 16:45:57 +02:00

Cargo.lock

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

CLAUDE.md

first implementation but far to be optimal

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Makefile

first implementation but far to be optimal

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mkdocs.yml

🔖 Add obipipeline parallel pipeline library

2026-04-24 17:10:07 +02:00

profile.json.gz

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

README.md

first implementation but far to be optimal

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test.sk.fasta

first implementation but far to be optimal

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xxx.HTML

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

README.md

toto

v1.3.5

Latest

2026-09-12 05:49:49 +00:00

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Shell 1.2%

Makefile 1%

Other 1%