OBIKmers/obikmer - obikmer - Gitea: Git with a cup of tea

OBIKmers/obikmer

T

Eric Coissac e008a8beb4 harden obiskio error handling with explicit variants and bounds checking

Extend `SKError` with `BadMagic`, `Truncated`, and `InvalidData` variants to replace `expect()` calls and unsafe slice indexing. Implement proper error chaining via `source()` and update `Display` formatting. Improve magic byte validation and serde error mapping for clearer debugging. Documents a broader roadmap for further crate hardening, including LRU eviction, concurrency, and benchmarking.

2026-05-09 18:30:19 +08:00

harden obiskio error handling with explicit variants and bounds checking

2026-05-09 18:30:19 +08:00

refactor: implement RoutableSuperKmer and update k-mer indexing pipeline

2026-05-01 09:33:26 +02:00

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

refactor: implement RoutableSuperKmer and update k-mer indexing pipeline

2026-05-01 09:33:26 +02:00

feat: implement persistent layered index and chunked binary format

2026-05-09 17:38:29 +08:00

feat: implement persistent layered index and chunked binary format

2026-05-09 17:38:29 +08:00

harden obiskio error handling with explicit variants and bounds checking

2026-05-09 18:30:19 +08:00

.DS_Store

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

.gitignore

refactor: implement RoutableSuperKmer and update k-mer indexing pipeline

2026-05-01 09:33:26 +02:00

Cargo.lock

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

CLAUDE.md

refactor: centralize k-mer config and introduce packed sequences

2026-05-08 06:34:24 +08:00

debug.log

Refactor: Extract utility function for string reversal

2026-04-30 06:58:46 +02:00

kmer_spectrum_raw.json

refactor: implement RoutableSuperKmer and update k-mer indexing pipeline

2026-05-01 09:33:26 +02:00

Makefile

Refactor: Simplify user authentication flow

2026-04-28 08:38:26 +02:00

mkdocs.yml

feat: implement persistent layered index and chunked binary format

2026-05-09 17:38:29 +08:00

profile.json.gz

Refactor: Simplify user authentication flow

2026-04-28 08:38:26 +02:00

README.md

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

test.sk.fasta

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

xxx.HTML

first implementation but far to be optimal

2026-04-19 12:17:16 +02:00

README.md

toto

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