coissac
f6f39f58fe
patch Tm calculation to return NaN if one of the two sequence is composed with letters different than ACGT
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git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/trunk@243 60f365c0-8329-0410-b2a4-ec073aeeaa1d
2010-02-24 15:00:11 +00:00
coissac
0214be011e
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/trunk@241 60f365c0-8329-0410-b2a4-ec073aeeaa1d
2010-01-22 09:20:09 +00:00
coissac
985d067bd8
New version 0.2 of ecoPCR, with Tm computation.
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Take care file format have change. You must use corresponding version of ecogrep
You can use -t option to go back to the old format without tm computation
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/trunk@239 60f365c0-8329-0410-b2a4-ec073aeeaa1d
2010-01-22 09:19:19 +00:00
coissac
f7e25b2082
New version 0.2 of ecoPCR, with Tm computation.
...
Take care file format have change. You must use corresponding version of ecogrep
You can use -t option to go back to the old format without tm computation
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/trunk@238 60f365c0-8329-0410-b2a4-ec073aeeaa1d
2010-01-22 09:16:53 +00:00
coissac
ad6f493d0f
Accept to deal with sequence in lower case
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git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/trunk@217 60f365c0-8329-0410-b2a4-ec073aeeaa1d
2009-05-13 13:21:10 +00:00
coissac
1428cd7499
patch online help in ecoPCR software
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git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/trunk@168 60f365c0-8329-0410-b2a4-ec073aeeaa1d
2008-05-16 08:53:11 +00:00
coissac
708b7c387e
Sequence circularity, bug correction
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git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/trunk@167 60f365c0-8329-0410-b2a4-ec073aeeaa1d
2008-04-28 16:46:18 +00:00
coissac
d863b7e48e
Manage sequence circularity
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git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/trunk@166 60f365c0-8329-0410-b2a4-ec073aeeaa1d
2008-04-28 15:49:12 +00:00
coissac
4b74056af8
change reference column for taxonomy filtering in ecogrep.c
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git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/trunk@165 60f365c0-8329-0410-b2a4-ec073aeeaa1d
2008-03-12 21:26:08 +00:00
coissac
471bf72bf9
Add rule for ecogrep build in makefile
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git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/trunk@116 60f365c0-8329-0410-b2a4-ec073aeeaa1d
2007-09-24 09:58:48 +00:00
coissac
bc4c7656c6
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/trunk@114 60f365c0-8329-0410-b2a4-ec073aeeaa1d
2007-09-24 09:48:08 +00:00
coissac
420cdb877b
add a -k option to the ecoPCR binary to substitute superkingdom column by a kingdom column
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git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/trunk@12 60f365c0-8329-0410-b2a4-ec073aeeaa1d
2007-03-27 16:33:50 +00:00
coissac
8c91d3d8f3
add a -k option to the ecoPCR binary to substitute superkingdom column by a kingdom column
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git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/trunk@11 60f365c0-8329-0410-b2a4-ec073aeeaa1d
2007-03-27 16:29:20 +00:00
coissac
78205cb1a3
patch to correct bug in switch between parts of the sequence database
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git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/trunk@8 60f365c0-8329-0410-b2a4-ec073aeeaa1d
2007-02-15 17:23:39 +00:00
coissac
ebe8c0b516
Initial version of ecoPCR
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git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/trunk@5 60f365c0-8329-0410-b2a4-ec073aeeaa1d
2007-02-15 13:33:32 +00:00
coissac