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e275be24e6
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add the free end gap alignment algorithm
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2010-01-19 09:05:39 +00:00 |
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bd1f1f9c8d
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2010-01-19 09:05:19 +00:00 |
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a81f7b933f
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add the free end gap alignment algorithm
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2010-01-19 09:04:46 +00:00 |
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05ed9e0a5c
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add management of fastq format
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2010-01-18 22:31:43 +00:00 |
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8ab403889e
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Add options relative to fastq format
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2010-01-18 22:30:35 +00:00 |
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d5232e59e3
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add interface to fastq io
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2010-01-18 22:29:25 +00:00 |
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44ff625c05
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patch rawiteritems method from WrappedBioseq
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2010-01-18 22:28:24 +00:00 |
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108e15ecc9
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2010-01-15 14:58:13 +00:00 |
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e560c4296b
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Add a new script to assemble amplicon from solexa pair-end run
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2010-01-15 10:56:51 +00:00 |
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b93d5ced56
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add progress bar during in files reading
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2010-01-05 23:40:53 +00:00 |
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f890e99868
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2010-01-05 23:37:54 +00:00 |
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dd6a6d6dd1
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2010-01-05 23:37:40 +00:00 |
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5304836a55
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patch a bug adding an 'evaluatued' key to sequences
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2009-12-25 15:08:36 +00:00 |
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e61ce3f4cd
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2009-12-18 13:53:52 +00:00 |
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501de6a32b
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Patch taxid merging
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2009-12-17 21:23:07 +00:00 |
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8c593bfb13
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patch the -a selection option
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2009-12-17 21:10:24 +00:00 |
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d4c180122f
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patch on fastaHead and fastaTail
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2009-12-17 07:00:55 +00:00 |
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79c61ca4a8
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script doc...
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2009-12-17 07:00:14 +00:00 |
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024d8a1fe8
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add two new scripts :
fastaHead and fastaTail
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2009-12-15 21:38:16 +00:00 |
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d2fdf6bf0c
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remove extra import
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2009-12-10 20:46:08 +00:00 |
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4b9ad7e9cf
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remove extra import
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2009-12-10 20:44:52 +00:00 |
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d51dc2c612
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remove extra import
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2009-12-10 20:43:58 +00:00 |
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8f364f9e0e
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add filtering option to fastaComplement
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2009-12-10 20:43:12 +00:00 |
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44ec34b386
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remove extra sys import
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2009-12-10 16:54:06 +00:00 |
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782ad9371b
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patch a bug in _extractsequence of ComplementLocation
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2009-12-10 16:53:27 +00:00 |
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87e11a195b
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create AlignedSequence class
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2009-12-10 16:49:26 +00:00 |
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dd83272aa7
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remove extra import
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2009-12-10 16:48:59 +00:00 |
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90a0dff84d
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remove extra import
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2009-12-10 16:46:24 +00:00 |
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f78bb14b6c
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remove extra sys import
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2009-12-10 16:44:04 +00:00 |
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cd4c1b1cad
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2009-12-10 15:27:34 +00:00 |
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b202125538
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remove out dated method (functionalities transfered since a long time to BioSequence)
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2009-12-10 15:02:39 +00:00 |
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9b3166dfaa
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First draft of a sphinx doc
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2009-12-10 14:19:48 +00:00 |
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18ced69908
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Patch bug in alignment
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2009-12-10 13:19:31 +00:00 |
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e6477f0d07
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Add alignment algorithm to obitools
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2009-12-10 12:57:20 +00:00 |
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4f6c374c8f
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remove id and definition alteration done by WrappedBioSeq
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2009-12-10 09:42:56 +00:00 |
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e277a7bbe5
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patch access to sequence key for WrappedBioseq
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2009-12-10 08:59:07 +00:00 |
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4919f4f1af
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Add two new obitools script fastaCount and fastaSample
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2009-11-01 16:39:00 +00:00 |
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0896bf77d5
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Add two new obitools script fastaCount and fastaSample
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2009-11-01 16:38:33 +00:00 |
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b9cd5f006b
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shift to version 0.1.3
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2009-10-22 08:10:28 +00:00 |
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2a1f715205
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2009-10-21 22:39:12 +00:00 |
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c34854e473
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2009-10-21 22:29:50 +00:00 |
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4943dbe904
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2009-10-21 22:19:57 +00:00 |
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7ab18e874e
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2009-10-21 22:17:46 +00:00 |
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40083456a8
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2009-10-21 22:12:10 +00:00 |
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863ee26562
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shift to version 0.1.2
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2009-10-21 21:51:56 +00:00 |
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d864bcac04
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Change to output to annotated fasta. Older output mode is available with -T option
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2009-10-21 21:27:02 +00:00 |
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208347fccf
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remove fasta35 stderr output
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2009-10-21 21:25:52 +00:00 |
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ff496f77ac
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Add a patch to eliminate divide by 0 during speed printing
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2009-10-21 20:14:18 +00:00 |
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cfa31aa0d2
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New version of setup.py script taking into account pyrex file and corresponding c file generation in the source directory
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2009-10-16 20:40:32 +00:00 |
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13fbc16a3e
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New version of setup.py script taking into account pyrex file and corresponding c file generation in the source directory
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2009-10-16 20:33:21 +00:00 |
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