coissac
a95ae5126b
Change the ecotag doc according to the new -M option
2015-10-27 18:56:49 +01:00
coissac
0e2f859839
Patch bug in the -E option of ecotag and add the -M option to limit the
...
action of the -E option
2015-10-27 18:48:03 +01:00
coissac
23717f5833
Add a first version of the obisubset tool and tag the version 1.2.0
2015-10-20 22:02:02 +02:00
coissac
fdeaf5956c
Change the way ecoPCRDB are written by obitools. If the obitools is
...
called with several sequence files as input when the ecoPCRDB is
requested as output format, the sequences are splitted in several sdx
files
2015-10-02 16:36:25 +02:00
coissac
343d9ec6df
Switch to version 1.1.22
2015-08-03 23:16:37 +02:00
coissac
7a993ec841
Patch a wrong import in the file
2015-08-03 23:14:13 +02:00
6170fac081
fixed a problem with the progress bar in obiselect when there is more
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than one category
2015-07-20 15:24:30 +02:00
coissac
764ee27c0d
Switch to the version 1.1.21
2015-07-13 15:31:20 +02:00
coissac
18d87aa1b1
Add a small work around patch for the --skip and --only options in
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illuminapairedend
2015-07-11 23:38:47 +02:00
coissac
1c91c27ee3
Tag the version 1.1.20
2015-07-03 14:57:24 +02:00
coissac
22d343b46a
Patch two small print bug in the new ecotag
2015-07-03 14:55:44 +02:00
coissac
2af94b9da7
Add docuentation for the new options and an option to manage the ecotag
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cache size
2015-07-03 10:39:59 +02:00
coissac
aa064dda57
Add two general options for limiting the analysis of a file to only a
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sub-part of the data:
- --skip <N>
- --only <N>
They respectively allow to first skip the N first sequences, and to
analysize only the <N> next sequences.
2015-07-03 09:10:49 +02:00
coissac
f38ccae698
Add a --minimum-circle option to ecotag and a cache on the self
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alignment scores of 1000000 of pairwise scores
2015-07-02 16:14:22 +02:00
b99881817a
Closes #9 : adds a parser in obiaddtaxids for the UNITE 'general FASTA
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release' format
2015-06-12 15:08:58 +02:00
df093b3fa9
updated the UNITE parser of obiaddtaxids
2015-06-11 17:47:00 +02:00
coissac
9ba67985e9
Switch to the 1.1.18 version
2015-06-02 16:01:16 +02:00
coissac
f74aeff002
Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools.git
2015-06-02 15:59:57 +02:00
coissac
b9fa718a2c
tag the 1.1.17 version
2015-06-02 15:53:41 +02:00
coissac
51a7ecde21
Patch the installer
2015-06-02 15:52:18 +02:00
6bf6cc6612
fixing a documentation problem (issue #3 )
2015-06-01 14:11:11 +02:00
191af9669a
modified the obisilva script to deal with version names containing dots,
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e.g. "119.1"
2015-06-01 14:07:19 +02:00
429fbbb61b
switching branch OBITools-1.01 to master
2015-06-01 10:41:26 +02:00
18c3a7dc08
Fixes #3
2015-05-22 18:00:13 +02:00
coissac
83b60ab7b0
Switch to version 1.1.16
2015-04-28 13:54:32 +00:00
coissac
8f61723141
Patch a bug in the getTaxid function
2015-04-28 13:52:19 +00:00
coissac
21ac43ca12
2015-04-16 13:59:12 +00:00
coissac
6be099b885
2015-04-16 13:06:56 +00:00
coissac
37d24febd2
2015-04-16 13:05:21 +00:00
coissac
ee1063ed28
2015-04-16 12:42:46 +00:00
coissac
6bd5407a13
2015-04-16 12:42:11 +00:00
coissac
dd5fbb0246
2015-04-16 12:41:43 +00:00
coissac
3a82469281
Use setuptools instead of distutils as much as possible
2015-04-16 09:32:07 +00:00
coissac
edfa796c83
Resolve dependency with cython by making a temporary install if needed
2015-04-16 08:52:30 +00:00
coissac
704dbd50c8
Switch to version 1.1.6
2015-04-15 16:10:57 +00:00
coissac
bd32b9f4e6
Switch to version 1.1.6
2015-04-15 16:10:18 +00:00
coissac
4547dd490b
Add a local copy of setuptools
2015-04-15 16:09:25 +00:00
coissac
48dc9497d4
Try to solve dependencies with sphinx at the first install
2015-04-15 16:08:36 +00:00
coissac
2614654b41
Change the install documentation
2015-03-21 19:28:45 +00:00
coissac
6bfec50f25
Debug the reading of gziped files, change the doc of obipr2 and obisilva
2015-03-21 17:58:45 +00:00
coissac
28dad843f1
2015-03-14 15:55:19 +00:00
coissac
230be1c08b
Add dependency to ipython
2015-03-10 15:36:17 +00:00
coissac
1ca1fa0b03
Switch to the version 1.1.2
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Add the exports of the doc in html epub and man pages
Modify the obitool script to setup the path to export/bin
2015-03-10 15:11:40 +00:00
coissac
9fa9d23c15
Switch to the version 1.1.2
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Add the exports of the doc in html epub and man pages
Modify the obitool script to setup the path to export/bin
2015-03-10 15:10:53 +00:00
bb4170dfdd
in obitaxonomy, fixed a typo, and a problem when adding taxa from a file with an associated path
2015-03-06 16:20:01 +00:00
coissac
9893dba6f6
2015-03-05 18:40:29 +00:00
coissac
173dde2857
New realease of obitools including a first version of obipr2 and obisilva
2015-03-05 17:04:05 +00:00
coissac
49e3eb3c77
Switch to the version 1.1 of obitools
2015-03-02 13:41:31 +00:00
f40c2f5245
in obitaxonomy, fixed a problem when adding taxa from file with an associated path
2015-02-23 14:02:31 +00:00
coissac
c0eb996dd3
Create a new major version
2015-02-20 19:31:31 +00:00
coissac
celinemercier