Merge branch 'windows_version' into 'master'

Windows version This branch allows for compiling OBITools on windows in the cygwin environment. It asks for installing the following cygwin packages : - binutils - gcc-core - python 2.7 See merge request !1
switch to the new version 1.2.7
2016-07-06 15:02:35 +02:00 · 2016-07-06 14:50:56 +02:00 · 2016-07-06 14:46:31 +02:00 · 2016-07-06 14:29:43 +02:00 · 2016-07-06 14:23:58 +02:00 · 2016-07-06 14:12:56 +02:00
137 changed files with 408 additions and 1389 deletions
@@ -201,7 +201,5 @@ def setup(**attrs):
    
    if 'ext_modules' not in attrs:
        attrs['ext_modules'] = EXTENTION
-        
-    print "$$$$$$$$$$$$$$$$$$$$$$$$$$$",COMMANDS
-    
+            
    ori_setup(**attrs)
--- a/Show More
+++ b/Show More
Author	SHA1	Message	Date
Aurélie Bonin	a6daa709e9	Merge branch 'windows_version' into 'master' Windows version This branch allows for compiling OBITools on windows in the cygwin environment. It asks for installing the following cygwin packages : - binutils - gcc-core - python 2.7 See merge request !1	2016-07-06 15:02:35 +02:00
abonin	22f98eaa4b	switch to the new version 1.2.7	2016-07-06 14:50:56 +02:00
abonin	38504ab03a	Final switch to the new cython interface on array.array	2016-07-06 14:46:31 +02:00
abonin	1b8a867fbf	switch to the new cython interface to array.array	2016-07-06 14:29:43 +02:00
abonin	9a9bd6c60f	switch to the new cython interface to array.array	2016-07-06 14:23:58 +02:00
abonin	6002fbaa98	Remove the reference to arrayarray.h	2016-07-06 14:12:56 +02:00
Aurélie Bonin	e869e16d9f	Adaptation for running with cygwin on windows platform	2016-07-06 11:55:32 +02:00
Aurélie Bonin	3a5ad68013	A very small fastq test file	2016-07-06 11:52:55 +02:00
coissac	b8dc49ef84	Rename members of the DNA profil strucuture to potentiel avoid a compile bug on windows cygwin	2016-06-28 15:13:30 +02:00
coissac	140f26977a	Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools.git	2016-06-28 15:10:39 +02:00
coissac	d96cf37147	Remove a debug trace in the installer	2016-06-28 15:10:12 +02:00
Celine Mercier	20f1c1d337	Fixed a potential bug with the parsing of taxonomic paths when using obitaxonomy after obiaddtaxids on a general UNITE database	2016-06-16 16:40:27 +02:00
coissac	f32ca9e9fa	Patch the obitool url on metabarcoding.org	2016-05-27 14:37:58 +02:00
coissac	a06e79102d	Switch to version 1.2.6	2016-05-27 12:56:14 +02:00
coissac	0e2c486178	Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools.git	2016-05-27 12:52:04 +02:00
Celine Mercier	950bae882b	Numbering version 1.2.5	2016-05-27 11:20:27 +02:00
Celine Mercier	683f3b5bbc	Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools.git	2016-05-26 16:01:03 +02:00
Celine Mercier	5490144788	Fixed a bug in obitaxonomy sometimes triggering an error when adding a new taxon from a file. Also now checks if taxon already in taxonomy.	2016-05-26 15:58:48 +02:00
coissac	42a3f98495	for cython to version 0.23.5 the latest 0.23 version	2016-04-07 12:19:42 +02:00
coissac	c395d76231	patch a bug in the sequence counting of obiselect	2016-04-06 14:46:08 +02:00
coissac	b2d2346eb7	Set the Cython required version to 0.23 because of a bug in the 0.24 version	2016-04-06 14:44:17 +02:00
coissac	ffb33f61a9	Switch to version 1.2.3	2016-04-04 18:49:10 +02:00
Celine Mercier	adbeac9684	Fixed major bug with -f UNITE_FULL option of obiaddtaxids	2016-04-04 16:36:05 +02:00
Celine Mercier	4aac47e639	Merge branch 'master' of git.metabarcoding.org:obitools/obitools	2016-03-30 16:35:49 +02:00
Celine Mercier	2028c69b3f	Fixed typo in obiaddtaxids documentation	2016-03-17 15:05:18 +01:00
coissac	2649cd268c	Switch to version 1.2.2	2016-01-12 20:57:47 +01:00
coissac	46b446f0c8	Add capacity to filter on merged sequences	2016-01-12 20:53:56 +01:00
Celine Mercier	6208cbee02	Fixes #20 and several other bugs related to that function	2016-01-08 11:40:39 +01:00
coissac	1d4c3f99b2	Patch a bug related to the -E et -M options	2015-10-27 20:16:07 +01:00
coissac	ba30e74dc9	Switch the version number to 1.2.1	2015-10-27 18:59:51 +01:00
coissac	0e8b97ca40	Modify the action of the -M option to fit the documentation	2015-10-27 18:58:32 +01:00
coissac	a95ae5126b	Change the ecotag doc according to the new -M option	2015-10-27 18:56:49 +01:00
coissac	0e2f859839	Patch bug in the -E option of ecotag and add the -M option to limit the action of the -E option	2015-10-27 18:48:03 +01:00