obitools/obitools3
2
0 Fork 0
Code Issues Pull Requests Actions Packages Projects Releases 66 Wiki Activity

obi import: minor doc/display improvements

Browse Source
This commit is contained in:
Celine Mercier committed 2020-05-20 11:46:29 +02:00
1 parent b5a29ac413
commit f13f8f6165
3 files changed
+3 -3
Download Patch File Download Diff File Expand all files Collapse all files

No files matched your search

python/obitools3/commands/import.pyx
+1 -1
View File
@@ -73,7 +73,7 @@ def addOptions(parser):
action="store_true", dest="import:preread", action="store_true", dest="import:preread",
default=False, default=False,
help="Do a first readthrough of the dataset if it contains huge dictionaries (more than 100 keys) for " help="Do a first readthrough of the dataset if it contains huge dictionaries (more than 100 keys) for "
"a much faster import.") "a much faster import. This option is not recommended and will slow down the import in any other case.")
def run(config): def run(config):
python/obitools3/parsers/embl.pyx
+1 -1
View File
@@ -177,7 +177,7 @@ def emblIterator_dir(dir_path,
for filename in files: for filename in files:
if read==only: if read==only:
return return
print("Parsing file %s (%d/%d)" % (tostr(filename), read_files, len(files))) print("Parsing file %s (%d/%d)" % (tostr(filename), read_files+1, len(files)))
f = uopen(filename) f = uopen(filename)
if only is not None: if only is not None:
only_f = only-read only_f = only-read
python/obitools3/parsers/genbank.pyx
+1 -1
View File
@@ -176,7 +176,7 @@ def genbankIterator_dir(dir_path,
for filename in files: for filename in files:
if read==only: if read==only:
return return
print("Parsing file %s (%d/%d)" % (tostr(filename), read_files, len(files))) print("Parsing file %s (%d/%d)" % (tostr(filename), read_files+1, len(files)))
f = uopen(filename) f = uopen(filename)
if only is not None: if only is not None:
only_f = only-read only_f = only-read