Eric Coissac
b49aba9c09
Implémentation du filtrage unique basé sur séquence et catégories
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Ajout d'une fonctionnalité pour le filtrage unique qui prend en compte à la fois la séquence et les catégories.
- Modification de la fonction ISequenceChunk pour accepter un classifieur unique optionnel
- Implémentation du traitement unique sur disque en utilisant un classifieur composite
- Mise à jour du classifieur utilisé pour le tri sur disque
- Correction de la gestion des clés de unicité en utilisant le code et la valeur du classifieur
- Mise à jour du numéro de commit
2026-01-14 19:18:17 +01:00
Eric Coissac
0678181023
Refactor chunk processing and update version commit
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Optimize chunk processing by moving variable declarations inside the loop and update the commit hash in version.go to reflect the latest changes.
2026-01-14 18:46:04 +01:00
Eric Coissac
ac0d3f3fe4
Update obiuniq for very large dataset
2025-12-18 14:11:11 +01:00
Eric Coissac
7f4ebe757e
Bug obiuniq - don't clean the chunks
2025-10-28 13:50:22 +01:00
Eric Coissac
04f3af3e60
some renaming of functions
2025-08-06 15:54:50 -04:00
Eric Coissac
f239e8da92
Rename ISequenceChunk
2025-08-05 08:49:45 -04:00
Eric Coissac
7c4042df6b
introduce obidefault
2025-01-27 17:12:45 +01:00
Eric Coissac
40fb4e9767
reduce the memory impact of obiuniq.
2024-11-27 13:30:16 +01:00
Eric Coissac
241f2286f2
remove the slice pool management
2024-09-24 16:31:30 +02:00
Eric Coissac
1b1cd41fd3
Add some code refactoring from the blackboard branch
2024-08-02 12:35:46 +02:00
Eric Coissac
67665a6b40
Xprize update
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Former-commit-id: d38919a897961e4d40da3b844057c3fb94fdb6d7
2024-07-25 18:09:03 -04:00
Eric Coissac
54a138196c
Patch a bug in fasta and fastq reading
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Former-commit-id: bcaa264b4c4a7c67617eb909b199176bf09913db
2024-06-21 14:28:57 +02:00
a36e830de3
homogenize worker count
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Former-commit-id: 4352ac6694c08023cdf0e090723fac8af655cea4
2023-12-20 08:14:07 +01:00
8d77cc4133
Change path of the obitools pkg
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Former-commit-id: 311cbf8df3b990b393c6f4885d62e74564423b65
2023-11-29 12:14:37 +01:00
2e0c1bd801
Correct the number of workers
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Former-commit-id: febbccfb853263e0761ecfccb0f09c8c1bf88475
2023-11-22 09:46:30 +01:00
988ae79989
Optimize memory allocation of the apat algorithms
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Former-commit-id: 5010c5a666b322715b3b81c1078d325e1f647ede
2023-03-28 19:37:05 +07:00
d88de15cdc
Refactoring codes for removing buffer size options. An some other changes...
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Former-commit-id: 10b57cc1a27446ade3c444217341e9651e89cdce
2023-03-07 11:12:13 +07:00
072b85e155
change the model for representing paired reads and extend its usage to other commands
2023-02-23 23:35:58 +01:00
f97f92df72
rename the iterator class
2023-01-22 22:04:17 +01:00
29563aa94e
Rename the Length methods Len to follow GO standart
2022-11-17 11:09:58 +01:00
eb32089305
Refactoring related to iterators
2022-11-16 17:13:40 +01:00
ad4a861261
Change some comments
2022-08-21 14:47:22 +02:00
cf5b4baa54
Small bug in sequence counting on merge
2022-05-30 16:28:59 +02:00
f14860a486
Patch header parting and formatiing
2022-05-27 11:53:29 +03:00
abcf02e488
Start to use leveled log
2022-02-24 12:14:52 +01:00
eaf65fbcce
Some code refactoring, a new version of obiuniq more efficient in memory and a first make file allowing to build obitools
2022-02-24 07:08:40 +01:00
2e7c1834b0
Big change iin the data model, and a first version of obiuniq
2022-02-21 19:00:23 +01:00
9737f97084
before big changes
2022-02-18 22:53:09 +01:00
2636882f9f
big bug on subschunk
2022-02-18 09:58:08 +01:00
ce226acac0
Few debug on obidistribute and some progresses on obiunique, but -c and -m options are still not working
2022-02-15 10:49:01 +01:00
3586ecc483
second version of obidistribute and a first buggy version of obiuniq
2022-02-15 00:47:02 +01:00
