dcdaf9e372
feat: support map and slice types in OBI attributes
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Extends OBI header parsing to recognize and deserialize JSON-like arrays and objects. Introduces safe conversion utilities in `obiutils` to cast generic interface values into typed maps, and exposes them via new `BioSequence` methods. Header values are now marshaled, quote-normalized, and formatted for map and slice types.
2026-06-01 13:21:11 +02:00
86e60aedd0
obicsv bug with stat on value map fields
2025-11-21 14:03:31 +01:00
5a3705b6bb
Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.
2025-03-25 16:44:46 +01:00
795df34d1a
Changes to be committed:
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modified: cmd/obitools/obitag/main.go
modified: cmd/obitools/obitag2/main.go
modified: go.mod
modified: go.sum
modified: pkg/obiformats/ncbitaxdump/read.go
modified: pkg/obioptions/version.go
modified: pkg/obiseq/attributes.go
modified: pkg/obiseq/taxonomy_lca.go
modified: pkg/obiseq/taxonomy_methods.go
modified: pkg/obiseq/taxonomy_predicate.go
modified: pkg/obitax/inner.go
modified: pkg/obitax/lca.go
new file: pkg/obitax/taxid.go
modified: pkg/obitax/taxon.go
modified: pkg/obitax/taxonomy.go
modified: pkg/obitax/taxonslice.go
modified: pkg/obitools/obicleandb/obicleandb.go
modified: pkg/obitools/obigrep/options.go
modified: pkg/obitools/obilandmark/obilandmark.go
modified: pkg/obitools/obilandmark/options.go
modified: pkg/obitools/obirefidx/famlilyindexing.go
modified: pkg/obitools/obirefidx/geomindexing.go
modified: pkg/obitools/obirefidx/obirefidx.go
modified: pkg/obitools/obirefidx/options.go
modified: pkg/obitools/obitag/obigeomtag.go
modified: pkg/obitools/obitag/obitag.go
modified: pkg/obitools/obitag/options.go
modified: pkg/obiutils/strings.go
2024-12-19 13:36:59 +01:00
00b0edc15a
refactoring of the file chunck writing
2024-11-29 18:15:03 +01:00
03f4e88a17
Fisrt functional version
2024-11-14 19:10:23 +01:00
65ae82622e
correction of several small bugs
2024-09-03 06:08:07 -03:00
67665a6b40
Xprize update
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Former-commit-id: d38919a897961e4d40da3b844057c3fb94fdb6d7
2024-07-25 18:09:03 -04:00
bd855c4965
Adds CSV as an input format
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Former-commit-id: a365bb6947064adc2709d66df05fa54c6fe47fad
2024-07-03 21:04:27 +02:00
fd663357b5
First version of obicleandb...
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Former-commit-id: e60b61d015abbf029a555b51de99b4252c50ab59
2024-07-01 17:12:42 +02:00
coissac
8d77cc4133
Change path of the obitools pkg
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Former-commit-id: 311cbf8df3b990b393c6f4885d62e74564423b65
2023-11-29 12:14:37 +01:00
coissac
5ea2b8afcf
a first version of obisummary
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Former-commit-id: cca1019d82a14a322f46a20890b996b5c7491d41
2023-11-09 22:33:06 +02:00
coissac
61c30f9b6a
Patch rev complement and first implementation of --auto in obicsv
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Former-commit-id: f3020e81283b1073c4d1c2d2ff0887e3998e6764
2023-11-07 09:37:07 +02:00
coissac
9bf006af93
A first prototype for the space of sequences
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Former-commit-id: 07dc6ef044b5b6a6fb45dc2acb01dffe71a96195
2023-08-27 14:58:55 +02:00
coissac
d46f6b06c5
several small changes
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Former-commit-id: c1cdb95885e44fd6ee7d1c963860d7ab41230c96
2023-06-07 17:50:10 +02:00
coissac
d5e84ec676
rename goutils to obiutils
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Former-commit-id: 2147f53db972bba571dfdae30c51b62d3e69cec5
2023-03-24 10:25:12 +07:00
coissac
d88de15cdc
Refactoring codes for removing buffer size options. An some other changes...
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Former-commit-id: 10b57cc1a27446ade3c444217341e9651e89cdce
2023-03-07 11:12:13 +07:00
coissac
f97f92df72
rename the iterator class
2023-01-22 22:04:17 +01:00
Eric Coissac
coissac