Eric Coissac
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7542e33010
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Several bugs dicoverd during the doc writing
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2025-04-04 16:59:27 +02:00 |
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Eric Coissac
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5a3705b6bb
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Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.
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2025-03-25 16:44:46 +01:00 |
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Eric Coissac
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75dd535201
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Add a --valid-taxid option to obigrep
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2025-02-27 18:12:55 +01:00 |
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Eric Coissac
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6a8061cc4f
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Add managment of the taxonomy alias politic
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2025-02-10 14:05:47 +01:00 |
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Eric Coissac
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0df082da06
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Adds possibility to extract a taxonomy from taxonomic path included in sequence files
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2025-01-30 11:18:21 +01:00 |
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Eric Coissac
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757448cb1e
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debug obigrep taxonomy options
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2025-01-15 20:48:34 +01:00 |
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Eric Coissac
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c58d9772ac
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Two small corrections on options
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2025-01-07 11:51:37 +01:00 |
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Eric Coissac
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5d0f996625
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Patch a small bug on json write
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2024-12-20 19:42:03 +01:00 |
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Eric Coissac
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795df34d1a
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Changes to be committed:
modified: cmd/obitools/obitag/main.go
modified: cmd/obitools/obitag2/main.go
modified: go.mod
modified: go.sum
modified: pkg/obiformats/ncbitaxdump/read.go
modified: pkg/obioptions/version.go
modified: pkg/obiseq/attributes.go
modified: pkg/obiseq/taxonomy_lca.go
modified: pkg/obiseq/taxonomy_methods.go
modified: pkg/obiseq/taxonomy_predicate.go
modified: pkg/obitax/inner.go
modified: pkg/obitax/lca.go
new file: pkg/obitax/taxid.go
modified: pkg/obitax/taxon.go
modified: pkg/obitax/taxonomy.go
modified: pkg/obitax/taxonslice.go
modified: pkg/obitools/obicleandb/obicleandb.go
modified: pkg/obitools/obigrep/options.go
modified: pkg/obitools/obilandmark/obilandmark.go
modified: pkg/obitools/obilandmark/options.go
modified: pkg/obitools/obirefidx/famlilyindexing.go
modified: pkg/obitools/obirefidx/geomindexing.go
modified: pkg/obitools/obirefidx/obirefidx.go
modified: pkg/obitools/obirefidx/options.go
modified: pkg/obitools/obitag/obigeomtag.go
modified: pkg/obitools/obitag/obitag.go
modified: pkg/obitools/obitag/options.go
modified: pkg/obiutils/strings.go
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2024-12-19 13:36:59 +01:00 |
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Eric Coissac
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05bf2bfd6c
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Add option related to agrep match on obigrep and obiannotate
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2024-09-09 16:52:13 +02:00 |
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Eric Coissac
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67665a6b40
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Xprize update
Former-commit-id: d38919a897961e4d40da3b844057c3fb94fdb6d7
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2024-07-25 18:09:03 -04:00 |
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8d77cc4133
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Change path of the obitools pkg
Former-commit-id: 311cbf8df3b990b393c6f4885d62e74564423b65
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2023-11-29 12:14:37 +01:00 |
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d5e84ec676
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rename goutils to obiutils
Former-commit-id: 2147f53db972bba571dfdae30c51b62d3e69cec5
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2023-03-24 10:25:12 +07:00 |
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072b85e155
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change the model for representing paired reads and extend its usage to other commands
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2023-02-23 23:35:58 +01:00 |
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4df99cec5b
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Chang log package
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2022-08-23 11:10:04 +02:00 |
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62cd1c44dc
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Corrects some bug in building the sequence filter
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2022-02-25 10:36:01 +01:00 |
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011898bd9d
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A first version of obigrep. Normally fully functionnal, but not fully tested
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2022-02-25 07:29:52 +01:00 |
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