Eric Coissac
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1b1cd41fd3
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Add some code refactoring from the blackboard branch
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2024-08-02 12:35:46 +02:00 |
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Eric Coissac
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54a138196c
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Patch a bug in fasta and fastq reading
Former-commit-id: bcaa264b4c4a7c67617eb909b199176bf09913db
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2024-06-21 14:28:57 +02:00 |
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Eric Coissac
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8f08959ebb
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Make the --no-progressbar option effective on graph building progress too.
Former-commit-id: 3fabecfc9de69ad406d6840c8f821c16eebaef46
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2024-04-22 12:01:43 +02:00 |
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0f3871d203
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Change the API of workers
Former-commit-id: 9b07306edd8cf28266f86f95823948fa99d39ea9
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2024-03-02 16:03:46 -04:00 |
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8d77cc4133
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Change path of the obitools pkg
Former-commit-id: 311cbf8df3b990b393c6f4885d62e74564423b65
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2023-11-29 12:14:37 +01:00 |
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7b7128196a
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small refactoring including doc
Former-commit-id: 6d6b527d89d77aa571831f7500f841840e280536
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2023-08-27 15:52:28 +02:00 |
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be47ec909c
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add the --skip-empty option
Former-commit-id: ec9cb0ecaf90a61bf9289cf4c089b5cc2fcb65a5
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2023-07-17 14:24:02 +02:00 |
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d5e84ec676
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rename goutils to obiutils
Former-commit-id: 2147f53db972bba571dfdae30c51b62d3e69cec5
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2023-03-24 10:25:12 +07:00 |
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b9bf88d4df
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Adds some new columns to the ratio file.
Former-commit-id: 1b2d6116622b754670e86b683077aceac2db4ce7
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2023-02-25 15:56:23 +01:00 |
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f97f92df72
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rename the iterator class
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2023-01-22 22:04:17 +01:00 |
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20b16c0ba1
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Force sequence reading to produce lowercase sequences.
Adds two columns to the obiclean ratio csv file
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2022-11-22 15:06:09 +01:00 |
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29563aa94e
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Rename the Length methods Len to follow GO standart
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2022-11-17 11:09:58 +01:00 |
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340579f6d7
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New version of LCS computation, with abug on alignment length patched patched
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2022-11-15 08:21:46 +01:00 |
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58dbdd8698
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requires that father.count > son.count
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2022-10-05 09:53:56 +02:00 |
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57ba460929
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add the obi_mutation attribute to the sequences
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2022-09-20 22:03:44 +02:00 |
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da8e3fd7b7
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Correct the orientation of the mutation pattern
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2022-09-20 22:03:01 +02:00 |
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3cd8aabd83
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Correct some misspelling in option helps
Changes to be committed:
modified: pkg/obitools/obiclean/options.go
modified: pkg/obitools/obiconvert/options.go
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2022-09-20 21:59:38 +02:00 |
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6b8f4490cf
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Change obiclean algorithm for a better evaluation of ratio
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2022-08-31 20:38:03 +02:00 |
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90ba980de6
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correct the gml writer
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2022-08-30 10:28:05 +02:00 |
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4df99cec5b
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Chang log package
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2022-08-23 11:10:04 +02:00 |
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5dd835d3e7
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A first functional version of obiclean
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2022-08-20 18:01:07 +02:00 |
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