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Author	SHA1	Message	Date
coissac	52244cdb64	Merge pull request #70 from metabarcoding/push-kuwnszsxmxpn ... Refactor chunk processing and update version commit	2026-01-14 18:47:17 +01:00
Eric Coissac	0678181023	Refactor chunk processing and update version commit ... Optimize chunk processing by moving variable declarations inside the loop and update the commit hash in version.go to reflect the latest changes.	2026-01-14 18:46:04 +01:00
coissac	f55dd553c7	Merge pull request #68 from metabarcoding/push-rrulynolpprl ... Push rrulynolpprl	2026-01-14 17:44:36 +01:00
coissac	4a383ac6c9	Merge branch 'master' into push-rrulynolpprl	2025-12-18 14:12:56 +01:00
Eric Coissac	371e702423	obiannotate --cut bug	2025-12-18 14:11:11 +01:00
Eric Coissac	ac0d3f3fe4	Update obiuniq for very large dataset	2025-12-18 14:11:11 +01:00
Eric Coissac	547135c747	End of obilowmask	2025-12-03 11:49:07 +01:00
coissac	f4a919732e	Merge pull request #65 from metabarcoding/push-yurwulsmpxkq ... End of obilowmask	2025-11-26 12:13:08 +01:00
Eric Coissac	e681666aaa	End of obilowmask	2025-11-26 11:14:56 +01:00
coissac	adf2486295	Merge pull request #64 from metabarcoding/push-yurwulsmpxkq ... End of obilowmask	2025-11-24 15:36:20 +01:00
Eric Coissac	272f5c9c35	End of obilowmask	2025-11-24 15:27:38 +01:00
coissac	c1b9503ca6	Merge pull request #63 from metabarcoding/push-vypwrurrsxuk ... obicsv bug with stat on value map fields	2025-11-21 14:04:34 +01:00
Eric Coissac	86e60aedd0	obicsv bug with stat on value map fields	2025-11-21 14:03:31 +01:00
coissac	961abcea7b	Merge pull request #61 from metabarcoding/push-mvxssvnysyxn ... Push mvxssvnysyxn	2025-11-21 13:25:19 +01:00
Eric Coissac	57c65f9d50	obimatrix bug	2025-11-21 13:24:24 +01:00
Eric Coissac	e65b2a5efe	obimatrix bugs	2025-11-21 13:24:06 +01:00
coissac	3e5f3f76b0	Merge pull request #60 from metabarcoding/push-qpnzxskwpoxo ... Push qpnzxskwpoxo	2025-11-18 15:35:41 +01:00
Eric Coissac	ccc827afd3	finalise obilowmask	2025-11-18 15:33:08 +01:00
Eric Coissac	cef29005a5	debug url reading	2025-11-18 15:30:20 +01:00
Eric Coissac	4603d7973e	implementation de obilowmask	2025-11-18 15:30:20 +01:00
coissac	8bc47c13d3	Merge pull request #58 from metabarcoding/push-vxkqkkrokwuz ... debug obimultiplex	2025-11-06 15:44:31 +01:00
Eric Coissac	07cdd6f758	debug obimultiplex ... bug option obimultiplex	2025-11-06 15:43:13 +01:00
coissac	432da366e2	Merge pull request #57 from metabarcoding/push-ywktmvpvtvmv ... debug taxonomy core dump	2025-11-05 19:07:41 +01:00
Eric Coissac	2d7dc7d09d	debug taxonomy core dump	2025-11-05 19:01:15 +01:00
coissac	5e12ed5400	Merge pull request #56 from metabarcoding/push-tnrvpwvqtzyo ... update install script	2025-11-04 18:11:21 +01:00
Eric Coissac	7500ee1d15	update install script	2025-11-04 18:09:15 +01:00
coissac	5a1d66bf06	Merge pull request #53 from metabarcoding/push-skmxzrzulvtq ... Push skmxzrzulvtq	2025-10-28 14:27:19 +01:00
Eric Coissac	0844dcc607	bug obimatrix	2025-10-28 13:57:31 +01:00
Eric Coissac	7f4ebe757e	Bug obiuniq - don't clean the chunks	2025-10-28 13:50:22 +01:00
coissac	5150947e23	Merge pull request #51 from metabarcoding/push-urtwmwktsrru ... Push urtwmwktsrru	2025-10-20 17:41:33 +02:00
Eric Coissac	d17a9520b9	work on obiclean chimera detection	2025-10-20 17:29:47 +02:00
Eric Coissac	29bf4ce871	add a feature to obimatrix adding obicsv option to obimatrix	2025-10-20 16:34:58 +02:00
coissac	d7ed9d343e	Update install_obitools.sh for missing directory	2025-10-15 08:32:06 +02:00
Eric Coissac	82b6bb1ab6	correct a bug in func (worker SeqWorker) ChainWorkers(next SeqWorker) SeqWorker	2025-08-11 15:09:49 +02:00
Eric Coissac	6d204f6281	Patch the fastq detector	2025-08-08 10:23:03 -04:00
Eric Coissac	7a6d552450	Changes to be committed: ... modified: pkg/obioptions/version.go	2025-08-07 17:01:48 -04:00
Eric Coissac	412b54822c	Patch a bug in obliclean for d>1 leading to some instability in the result	2025-08-07 17:01:38 -04:00
Eric Coissac	730d448fc3	Allows for only one cpu and it should work	2025-08-06 16:09:25 -04:00
Eric Coissac	04f3af3e60	some renaming of functions	2025-08-06 15:54:50 -04:00
Eric Coissac	997b6e8c01	correct the fastq detector for distinguish with a csv ngsfilter	2025-08-06 15:52:54 -04:00
Eric Coissac	f239e8da92	Rename ISequenceChunk	2025-08-05 08:49:45 -04:00
Eric Coissac	ed28d3fb5b	Adds a --u-to-t option	2025-07-07 15:35:26 +02:00
Eric Coissac	43b285587e	Debug on taxonomy extraction and CSV conversion	2025-07-07 15:29:40 +02:00
Eric Coissac	8d53d253d4	Add a reading option on readers to convet U to T	2025-07-07 15:29:07 +02:00
Eric Coissac	8c26fc9884	Add a new test on obisummary	2025-07-07 15:28:29 +02:00
Eric Coissac	235a7e202a	Update obisummary to account new obiseq.StatsOnValues type	2025-06-19 17:21:30 +02:00
Eric Coissac	27fa984a63	Patch obimatrix accoring to the new type obiseq.StatsOnValues	2025-06-19 16:51:53 +02:00
Eric Coissac	add9d89ccc	Patch the Min and Max values of the expression language	2025-06-19 16:43:26 +02:00
Eric Coissac	9965370d85	Manage a lock on StatsOnValues	2025-06-17 16:46:11 +02:00
Eric Coissac	8a2bb1fe82	Changes to be committed: ... modified: pkg/obioptions/version.go modified: pkg/obiseq/merge.go	2025-06-17 12:11:35 +02:00