Commit Graph

12 Commits

Author SHA1 Message Date
f97f92df72 rename the iterator class 2023-01-22 22:04:17 +01:00
20b16c0ba1 Force sequence reading to produce lowercase sequences.
Adds two columns to the obiclean ratio csv file
2022-11-22 15:06:09 +01:00
29563aa94e Rename the Length methods Len to follow GO standart 2022-11-17 11:09:58 +01:00
340579f6d7 New version of LCS computation, with abug on alignment length patched patched 2022-11-15 08:21:46 +01:00
58dbdd8698 requires that father.count > son.count 2022-10-05 09:53:56 +02:00
57ba460929 add the obi_mutation attribute to the sequences 2022-09-20 22:03:44 +02:00
da8e3fd7b7 Correct the orientation of the mutation pattern 2022-09-20 22:03:01 +02:00
3cd8aabd83 Correct some misspelling in option helps
Changes to be committed:
	modified:   pkg/obitools/obiclean/options.go
	modified:   pkg/obitools/obiconvert/options.go
2022-09-20 21:59:38 +02:00
6b8f4490cf Change obiclean algorithm for a better evaluation of ratio 2022-08-31 20:38:03 +02:00
90ba980de6 correct the gml writer 2022-08-30 10:28:05 +02:00
4df99cec5b Chang log package 2022-08-23 11:10:04 +02:00
5dd835d3e7 A first functional version of obiclean 2022-08-20 18:01:07 +02:00