8b4cf677c6
[obitools] Add validation for paired files and config template support
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- Enforce requirement of both forward (-F) and reverse files in obipairing/main.go
- Add config template support to obtagpcr via CLIAskConfigTemplate()
- Remove redundant Required() constraints in options.go
- Introduce new helper CLIHasPairedFiles()
2026-04-29 15:01:37 +02:00
d1c31c54de
add a first version of the inline documentation
2025-03-12 14:40:42 +01:00
7c4042df6b
introduce obidefault
2025-01-27 17:12:45 +01:00
9acb4a85a8
Refactoring of the default values
2025-01-24 18:09:59 +01:00
e6b87ecd02
Reduce memory allocation events
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Former-commit-id: fbdb2afc857b02adc2593e2278d3bd838e99b0b2
2024-06-22 21:01:53 +02:00
coissac
37c3e16d5d
Adds the option --pairing-scale to obipairing
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Former-commit-id: c60416708467f5e818e70e08b3c512014b6212f0
2023-12-07 12:28:16 +01:00
coissac
8d77cc4133
Change path of the obitools pkg
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Former-commit-id: 311cbf8df3b990b393c6f4885d62e74564423b65
2023-11-29 12:14:37 +01:00
coissac
b556e045e5
Adds option to tune the pairing of the sequences in obipairing and some stats to the results
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Former-commit-id: a6cf9cb4d4ab20a433a2534fd7d11cd3ca8ebbaa
2023-11-24 12:29:37 +01:00
coissac
b3922c3896
Produce less weird crash on non existing files
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Former-commit-id: 74bb27bd53c685be530632994bd2ba24c1f362e1
2023-03-07 17:34:25 +07:00
coissac
ebb05fcdf7
code refactoring. Prefix function name having behaviour depending on command line option by the prefix CLI
2023-02-23 23:32:59 +01:00
coissac
6e36b22040
Normalise the managment of speed measure
2023-02-16 13:31:49 +01:00
coissac
526bf79c7f
Patch for some lost of data during sequence writing
2023-02-08 13:14:26 +01:00
coissac
fa6853fca1
Comment profiling code
2023-01-31 22:39:34 +01:00
coissac
09fc426b67
Refactoring related to iterators
2022-11-16 17:13:03 +01:00
coissac
abcf02e488
Start to use leveled log
2022-02-24 12:14:52 +01:00
coissac
38e4655f38
Correct for a strange bug...
2022-02-07 11:51:35 +01:00
coissac
8dbda68746
Adds the command obimultiplex
2022-02-01 17:31:28 +01:00
coissac
251d3be923
Add automatic garbage collection on ApatPattern
2022-01-24 17:26:30 +01:00
coissac
6571296bb2
Add some documentation
2022-01-16 19:53:39 +01:00
coissac
64676db3f4
Connect the command line options to the algorithm of obipairing
2022-01-16 17:30:30 +01:00
coissac
576a9f4d2d
A global version of a Slice pool
2022-01-16 00:21:42 +01:00
coissac
e1b7e1761c
Change the memory management for thee BuildAlignment function
2022-01-15 19:10:16 +01:00
coissac
e8fff6477b
Work on iterators and recycling of biosequences
2022-01-14 23:11:36 +01:00
coissac
3848c54184
Refactoring
2022-01-14 15:16:41 +01:00
coissac
b9b9c0f179
Patch module name from oa2 to obitools
2022-01-13 23:43:01 +01:00
coissac
f53bf1b804
First commit
2022-01-13 23:27:39 +01:00
Eric Coissac
coissac