13 Commits

Author	SHA1	Message	Date
Eric Coissac	60f27c1dc8	Add error handling for ambiguous bases in k-mer encoding ... This commit introduces error handling for ambiguous DNA bases (N, R, Y, W, S, K, M, B, D, H, V) in k-mer encoding. It adds new functions IterNormalizedKmersWithErrors and EncodeNormalizedKmersWithErrors that track and encode the number of ambiguous bases in each k-mer using error markers in the top 2 bits. The commit also updates the version string to reflect the latest changes.	2026-02-04 21:45:08 +01:00
Eric Coissac	4603d7973e	implementation de obilowmask	2025-11-18 15:30:20 +01:00
Eric Coissac	ef05d4975f	Upadte the scoring schema of obipairing	2025-02-21 22:41:34 +01:00
Eric Coissac	373464cb06	On development genome skim tools	2024-08-30 11:17:33 +02:00
Eric Coissac	e6b87ecd02	Reduce memory allocation events ... Former-commit-id: fbdb2afc857b02adc2593e2278d3bd838e99b0b2	2024-06-22 21:01:53 +02:00
Eric Coissac	8d77cc4133	Change path of the obitools pkg ... Former-commit-id: 311cbf8df3b990b393c6f4885d62e74564423b65	2023-11-29 12:14:37 +01:00
Eric Coissac	b556e045e5	Adds option to tune the pairing of the sequences in obipairing and some stats to the results ... Former-commit-id: a6cf9cb4d4ab20a433a2534fd7d11cd3ca8ebbaa	2023-11-24 12:29:37 +01:00
Eric Coissac	4117cbdd08	Stabilize the obipairing output. whant run twice on the same dataset results are identical	2023-02-05 11:06:31 +01:00
Eric Coissac	29563aa94e	Rename the Length methods Len to follow GO standart	2022-11-17 11:09:58 +01:00
Eric Coissac	8aa323dad5	Add a first version of obitag the successor of ecotag	2022-10-26 13:16:56 +02:00
Eric Coissac	2e7c1834b0	Big change iin the data model, and a first version of obiuniq	2022-02-21 19:00:23 +01:00
Eric Coissac	b9b9c0f179	Patch module name from oa2 to obitools	2022-01-13 23:43:01 +01:00
Eric Coissac	f53bf1b804	First commit	2022-01-13 23:27:39 +01:00