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5 Commits
Author SHA1 Message Date
Eric Coissac d735ac6188 feat: add JSON input support for biological sequences 
Introduce a streaming JSON parser that decodes biological sequences using `goccy/go-json` with configurable batching to minimize memory overhead. Extend the CLI, file suffix filters, and MIME type detection to automatically recognize and route JSON inputs. Refactor header parsing into a centralized switch-case handler for improved maintainability.
 2026-07-03 10:16:55 +02:00
Eric Coissac 6d204f6281 Patch the fastq detector 2025-08-08 10:23:03 -04:00
Eric Coissac 997b6e8c01 correct the fastq detector for distinguish with a csv ngsfilter 2025-08-06 15:52:54 -04:00
Eric Coissac 3424d3057f Changes to be committed: 
modified:   pkg/obiformats/ngsfilter_read.go
	modified:   pkg/obioptions/version.go
	modified:   pkg/obiutils/mimetypes.go
 2025-05-14 14:53:25 +02:00
Eric Coissac 8448783499 Make sequence files recognized as a taxonomy 2025-03-14 14:22:22 +01:00