6 Commits

Include renames

Author	SHA1	Message	Date
Eric Coissac	620646d412	fix: validate inputs and fix coordinate offsets in pattern matching ... Introduce explicit input validation and a `(-1, -1, -1)` sentinel return value to signal invalid or unreliable matches. Add pre-call length checks and early returns to prevent panics during indel relocation. Fix an index offset bug in coordinate calculation by preserving the original fragment position before applying alignment deltas. Update match filtering to enforce reliability checks only on successfully relocated alignments. Comprehensive tests validate edge cases, boundary constraints, and error thresholds.	2026-08-19 17:25:44 +02:00
Eric Coissac	d17a9520b9	work on obiclean chimera detection	2025-10-20 17:29:47 +02:00
Eric Coissac	5a3705b6bb	Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.	2025-03-25 16:44:46 +01:00
Eric Coissac	05bf2bfd6c	Add option related to agrep match on obigrep and obiannotate	2024-09-09 16:52:13 +02:00
Eric Coissac	65ae82622e	correction of several small bugs	2024-09-03 06:08:07 -03:00
Eric Coissac	a812fe8b72	debug of obimultiplex ... Former-commit-id: 1cf276840feb9d6135d96bd1bf63627d3085ae6e	2024-06-18 23:38:33 +02:00