Eric Coissac
eae41ac81c
fix: respect config defaults when --allowed-mismatches is unset
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The change replaces numeric threshold checks with an explicit flag state tracker for the `--allowed-mismatches` option. This ensures per-primer mismatch settings from configuration files are preserved when the CLI parameter is omitted or zero, making the command-line flag act strictly as an explicit override rather than a default fallback.
2026-08-19 16:40:48 +02:00
Eric Coissac
1c6ab1c559
Changes to be committed:
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modified: pkg/obingslibrary/multimatch.go
modified: pkg/obioptions/version.go
2025-06-17 09:06:42 +02:00
Eric Coissac
5a3705b6bb
Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.
2025-03-25 16:44:46 +01:00
Eric Coissac
3e00d39d47
In obimultiplex, patch a bug when no tag are associated to a primer.
2024-10-22 14:12:20 +02:00
Eric Coissac
65ae82622e
correction of several small bugs
2024-09-03 06:08:07 -03:00
Eric Coissac
0187a82c5f
Patch a bug in obimultiplex loosing sequence with primer dimer
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Former-commit-id: ea14e1aa2e4670c19fe8ee7ec61565bd21cc25b0
2024-06-30 17:42:28 +02:00
Eric Coissac
818ce87bab
Patch some bugs in writing files
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Former-commit-id: 612868a281dc0ecf4e6c5776973735e5c71bd517
2024-06-19 13:15:30 +02:00
Eric Coissac
a812fe8b72
debug of obimultiplex
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Former-commit-id: 1cf276840feb9d6135d96bd1bf63627d3085ae6e
2024-06-18 23:38:33 +02:00
Eric Coissac
44533fb61e
Bugs in the non stric tag matching algorithm
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Former-commit-id: efad98d6521322209ce22bc58fab54c7bddd19ec
2024-06-10 21:19:26 +02:00
Eric Coissac
1b43fa4247
First complete version of obimultiplex2
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Former-commit-id: 170593bd597c7914d3f1fd3d2b865186d7f11966
2024-06-06 23:11:13 +02:00
Eric Coissac
c8ad96f5e6
First fonctionnal version with fixed tag length and strict matching
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Former-commit-id: 5affee2c7c66dd1da5b17c2d1ea64f44db76df50
2024-06-04 21:46:09 +02:00
Eric Coissac
65f5109957
Plenty of small bugs
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Former-commit-id: 42c7fab7d65906c80ab4cd32da6867ff21842ea8
2024-06-04 16:49:12 +02:00
Eric Coissac