 Eric Coissac
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98b3bc2a8c
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Patch a bug on the reading of each last sequence of a chunck in the fasta reader
Former-commit-id: eacf64112582befa4751f66352999a28abf349f7
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2024-05-27 10:17:17 +02:00 |
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Eric Coissac
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d249902073
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A lot of changes and debug... A complete first
version of the recipy in the Cookbook about
avaluating primers
Former-commit-id: 6c816f5546b3f472f6930d112abe3da04d2d5a55
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2024-05-26 12:56:29 +02:00 |
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Eric Coissac
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55ce36f329
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Update of obipcr and homogenization of logging
Former-commit-id: 46abf47c19ace5248042c02cf1f81d9f6c12eb10
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2024-05-16 15:18:30 +02:00 |
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Eric Coissac
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61be8a55b1
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Merge obiminion and obiconsensus
Former-commit-id: 49d65d671e9fe4454de60c20507c3d8df6e9c51c
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2024-05-14 17:53:32 +02:00 |
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Eric Coissac
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7fcb0538a3
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Cleaning of obiminion
Former-commit-id: 75148afd70e5006cc6855bcddc86506b099761a1
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2024-05-14 11:45:46 +02:00 |
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Eric Coissac
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017030bcce
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Add obiminion first version
Former-commit-id: aa5ace7bd4d2266333715fca7094d1c3cbbb5e6d
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2024-05-14 08:16:12 +02:00 |
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Eric Coissac
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9e63013bc2
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Correction on obiformat of bug leading to partial parsing and add godocs
Former-commit-id: b27105355f1a330eedf6eaa72c8ac94f06806c28
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2024-05-07 10:54:12 +02:00 |
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Eric Coissac
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5b98393a68
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Refactor sequence file reading
Former-commit-id: 3dcb96e68da648d72bb585da047e3496427d7851
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2024-05-01 00:50:23 +02:00 |
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Eric Coissac
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33d4d63acd
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Adds a warning on max-cpu = 1
Former-commit-id: ed02328d7d0e36b7c6b77ea776c0bde7c0eb64f3
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2024-04-30 13:27:19 +02:00 |
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Eric Coissac
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d30d736e48
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Simplify the workers code by removing dupplicates
Former-commit-id: 638fcf8d88dd93755d1ec89c8fe92f6ed3f733df
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2024-04-30 12:22:22 +02:00 |
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Eric Coissac
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f37477b26c
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Progress bar are automagically disabled if stderr is redirected
Former-commit-id: 20a3a22db7dcf530b9e9cad9090b46f22db0d078
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2024-04-22 12:23:59 +02:00 |
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Eric Coissac
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8f08959ebb
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Make the --no-progressbar option effective on graph building progress too.
Former-commit-id: 3fabecfc9de69ad406d6840c8f821c16eebaef46
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2024-04-22 12:01:43 +02:00 |
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Eric Coissac
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df74b2b2bd
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Add a basic managment of obisequenceslice to obiscript
Former-commit-id: c3d2888ebbfb237826630548b839ce93cdbf86eb
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2024-04-16 12:58:25 +02:00 |
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Eric Coissac
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cb35612a6c
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new --version option and qualities method in obiscript
Former-commit-id: 7b0ce2901785d5c7494dec3a7a95d1fc5dc4a52b
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2024-04-13 12:40:43 +02:00 |
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Eric Coissac
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0a2ea962db
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obitag bug
Former-commit-id: e6f8750d8db74c0b175c4a93d5b58bd84f293d52
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2024-04-03 16:28:06 +02:00 |
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Eric Coissac
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3d1d9f32df
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Make obiconsensus using the count of the sequences
Former-commit-id: 7fc5292aeb225843a86cd85591a5405e35125e3d
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2024-04-03 12:58:32 +02:00 |
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Eric Coissac
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d68210ef94
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Tag version 4.2.0
Former-commit-id: 9315e463fcf9c654ff34738d0fb93c94538600a1
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2024-04-03 12:57:00 +02:00 |
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Eric Coissac
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bf41d16e67
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Patch a bug in obitag on the identification of the best match
Former-commit-id: e551b3b83e79a517dd5409ea8112fb005c39c2ee
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2024-04-03 12:30:40 +02:00 |
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Eric Coissac
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e25c3b7365
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Bug in the json parsing
Former-commit-id: e652b04b9fa7e11124eb5930c7bec4613c808758
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2024-03-19 13:50:13 +01:00 |
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Eric Coissac
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11a14b6dc8
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Parse correctly json header when a curly brace is included in a string.
Former-commit-id: 35225bc7db165825d4e5ef583324e54829695503
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2024-03-19 13:47:03 +01:00 |
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Eric Coissac
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b428c48353
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Obitag, allow for reference sequences with bad taxid, which are discarded with the emission of a warning
Former-commit-id: a8781da1afa86de9c34b008959f0705ae69fc64f
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2024-03-18 19:11:41 +01:00 |
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