 Eric Coissac
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6cb7a5a352
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Changes to be committed:
modified: cmd/obitools/obitag/main.go
modified: cmd/obitools/obitaxonomy/main.go
modified: pkg/obiformats/csvtaxdump_read.go
modified: pkg/obiformats/ecopcr_read.go
modified: pkg/obiformats/ncbitaxdump_read.go
modified: pkg/obiformats/ncbitaxdump_readtar.go
modified: pkg/obiformats/newick_write.go
modified: pkg/obiformats/options.go
modified: pkg/obiformats/taxonomy_read.go
modified: pkg/obiformats/universal_read.go
modified: pkg/obiiter/extract_taxonomy.go
modified: pkg/obioptions/options.go
modified: pkg/obioptions/version.go
new file: pkg/obiphylo/tree.go
modified: pkg/obiseq/biosequenceslice.go
modified: pkg/obiseq/taxonomy_methods.go
modified: pkg/obitax/taxonomy.go
modified: pkg/obitax/taxonset.go
modified: pkg/obitools/obiconvert/sequence_reader.go
modified: pkg/obitools/obitag/obitag.go
modified: pkg/obitools/obitaxonomy/obitaxonomy.go
modified: pkg/obitools/obitaxonomy/options.go
deleted: sample/.DS_Store
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2025-06-04 09:48:10 +02:00 |
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Eric Coissac
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7542e33010
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Several bugs dicoverd during the doc writing
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2025-04-04 16:59:27 +02:00 |
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Eric Coissac
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8448783499
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Make sequence files recognized as a taxonomy
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2025-03-14 14:22:22 +01:00 |
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Eric Coissac
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d1c31c54de
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add a first version of the inline documentation
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2025-03-12 14:40:42 +01:00 |
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Eric Coissac
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65bd29b955
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normalize the usage of obitaxonomy
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2025-03-08 13:00:55 +01:00 |
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Eric Coissac
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6a8061cc4f
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Add managment of the taxonomy alias politic
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2025-02-10 14:05:47 +01:00 |
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Eric Coissac
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0df082da06
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Adds possibility to extract a taxonomy from taxonomic path included in sequence files
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2025-01-30 11:18:21 +01:00 |
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Eric Coissac
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8a28c9ae7c
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add the --download-ncbi option to obitaxonomy
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2025-01-29 12:38:39 +01:00 |
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Eric Coissac
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00f2dc2697
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Rename obifind obitaxonomy and introduce the new CSV format for taxonomy.
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2025-01-29 10:45:26 +01:00 |
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