Eric Coissac
8c7017a99d
- Update obioptions.Version from "Release 4.4.29" to "/v/ Release v5" - Update version.txt from 4.29 → .30 (automated by Makefile)
1.3 KiB
Semantic Description of obiiter Package Features
This Go package provides functional-style utilities for processing biological sequence data (e.g., FASTQ/FASTA), modeled via the IBioSequence interface.
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Pipeable: A function type representing a unary transformation on anIBioSequence. -
Pipeline(start, parts...): Composes a sequence ofPipeableoperations into a single executable pipeline. It applies transformations sequentially: input → start → part₁ → … → output. -
(IBioSequence).Pipe(start, parts...): A convenience method enabling fluent chaining of transformations directly on a sequence object. -
Teeable: A function type for operations that split input into two independent output streams (e.g., filtering + logging). -
(IBioSequence).CopyTee(): A high-level tee operation that duplicates the input stream into two identical, concurrently readableIBioSequenceinstances.- Uses goroutines to ensure non-blocking parallel consumption.
- Ensures proper lifecycle management: closing the second stream when the first is closed.
- Preserves paired-end status (
MarkAsPaired) if applicable.
Together, these features support modular, composable, and concurrent biosequence processing pipelines—ideal for scalable NGS data workflows.