Files
obitools4/go.sum
Eric Coissac b26b76cbf8 Add TOML persistence support for KmerSet and KmerSetGroup
This commit adds support for saving and loading KmerSet and KmerSetGroup structures using TOML, YAML, and JSON formats for metadata. It includes:

- Added github.com/pelletier/go-toml/v2 dependency
- Implemented Save and Load methods for KmerSet and KmerSetGroup
- Added metadata persistence with support for multiple formats (TOML, YAML, JSON)
- Added helper functions for format detection and metadata handling
- Updated version commit hash
2026-02-05 14:57:22 +01:00

113 lines
9.9 KiB
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